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GT13848

CSHL Arabidopsis genetrap mutant lines

Original: GT13848

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13848

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29010395 [Map]; Strand: c
      • AT1G77210.1 - [+] show detail - sugar transporter 14
        Distance: 0; Region: exon5 (CDS)
      • AT1G77210.2 - [+] show detail - sugar transporter 14
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13848 - 3-prime edge
    CCGACCGTTA CCGACCGTTT TCATCCCTAC GAGGATGCTT CCTCTCCTAC 
    CGTAGATTCT GGTGACGTAA GAAGCTCCGA AAGTTGAGAT TAAACCGGCG
    AAGTAGAGAG AAGAAGTGAA GAGTGTGAGG ATTTGATTGT CGTATTTGCA
    GTAATCTGTT TCGTTTAGAT GCATTTGCTT TCTTTTGTAG ATCCCTGGGA
    AGAACTCTTT CAAGAAATCG TCCATTGATG TAACACCACC TGCGTTTAAC
    AAGGACGAAT AAACAAAAAT GAGCATTGGT CTTGCATAGG TTCCTTGATT
    TACAAGAAAC TAAGCAGTCG ACACTTAAAC AAAGCTGAAG CTAACTCTCG
    TCAGAGAGGG AACTGATATT TTCGGACAAA ACAGGGGAAA TTTAACAAAA
    CTGAAGCAGG CCCTTTTCAA AAACAATACT TGGCAGTTTC AGAATCTGGC
    TATTTGATTG GTATAAGATA AAACCAGATC GAGAAAGTTA TCTAACCAGA
    GACTCCAAGA TCATAGCCGA AAAGAGAGCC TCCCATGGAT CCGACGATGC
    AAGCGAAGAT GAAGTAAGAA GTGATCCGAT GTTCATAGAG ATGAGCTCTC
    TTTAGGCCTC CTTCATCGGT AAGAGCTCCA CCGGCCATGG CTTTAAAATC
    TTGAAGACAA AAGGAGGAAT ATTCTGGTCT CCCTCTTTGT AATAAAATTT
    GACTGAGGGT TGTGAACTAG TTGTGATCAC TATGATCAAG ATTTTAGAGA
    TAAATAAAAA GGTTGGATAT TAGCAGACTA GCTGTTACAC TTTGACCATC
    TATCTTTCCT TATCCCTTTT TCTAAGGATA TATATATGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27217061 [Map]; Strand: w
      • AT1G72290.1 - [+] show detail - Kunitz family trypsin and protease inhibitor protein
        Distance: 270; Region: intergenic
      • AT1G72300.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 416; Region: intergenic
    Flanking Genome Sequence: GT13848 - 5-prime edge
    CCTACTTTCT CCCTGCCCAA AAACACTCAA AACGACGACG TTTAGCAAGA 
    CATATATTAT CCAATAAGTT TTAAAAGTCT AAATCAAAAG CTTTCGTTTC
    ACAAAAACCT CTCTCTTTTT TTCTCTCTCT CTCTCTGTCT CTGAATCCTC
    CATTGATGTT TAGGTATGTC TCAGTTTCTC AGATTCTCAT GCTTTGTCTT
    CTTTCGCGCG TCATACGACT CTTTCTCNTC ACTCGACGAC TCTTTGGTAA
    CTATGCACAC CAAATGTTCG ATTAAATGCC GCTTACAGAC CCCACTTGAG
    TTATTCTGTT AGCATCACAG ATTTTTTTGT TTTCTTAGAC CTCTTAAGAA
    CGGAGAAATT TCATGGAAGC CAAAGTTGGT TTGATCATAC GATACATTCC
    AGATTTCTAA TCAAATCCTT TTATAAAAAT CTGCTTTTGA TCATGTTAAA
    GCCAAAGGGT TTTACATAGC TAGAGAGCTA CATGTATATA GAAATCGTTT
    GAATGTCACG AGCTGCATAA ATTCCTGTTC TTTACATCAT CAAAGCTTCT
    ATTACCATCA AAATTATAAT TTACATGGAA ATGATGGTTA ACATATGCAA
    TTGACAAGAA AAATATGTGT ATATTTACTT ATGCAGATAT TTGAATCTGG
    TCACAATGAT GAATGTAGGG AAGGAAGGCA CACACACAGT TACGTCTCTT
    CTTCTTCTC

AT1G72290.1

Model type
Protein coding
Short Description
Kunitz family trypsin and protease inhibitor protein
Computational Description
Kunitz family trypsin and protease inhibitor protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: Kunitz family trypsin and protease inhibitor protein (TAIR:AT1G73325.1); Has 331 Blast hits to 331 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72300.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.
Computational Description
Leucine-rich receptor-like protein kinase family protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 184889 Blast hits to 127916 proteins in 4307 species: Archae - 126; Bacteria - 18793; Metazoa - 54455; Fungi - 9661; Plants - 78637; Viruses - 498; Other Eukaryotes - 22719 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77210.1

Model type
Protein coding
Short Description
sugar transporter 14
Curator Summary
AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose.
Computational Description
sugar transport protein 14 (STP14); FUNCTIONS IN: galactose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 28233 Blast hits to 27797 proteins in 1954 species: Archae - 451; Bacteria - 13247; Metazoa - 4056; Fungi - 6843; Plants - 2415; Viruses - 0; Other Eukaryotes - 1221 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77210.2

Model type
Protein coding
Short Description
sugar transporter 14
Curator Summary
AtSTP14 belongs to the family of sugar transport proteins (AtSTPs)in volved in monosaccharide transport. Heterologous expression in yeast revealed that AtSTP14 is the transporter specifc for galactose and does not transport other monosaccharides such as glucose or fructose.
Computational Description
sugar transport protein 14 (STP14); FUNCTIONS IN: galactose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1).
Link
InterPro Scan - TAIR