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GT13850

CSHL Arabidopsis genetrap mutant lines

Original: GT13850

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13850

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11588125 [Map]; Strand: c
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT13850 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTATT CATAGCTCCT GCCTTCTTGT 
    TATGGTCATA ACCAGGCCGT TTCTCGCGGC TCACGTAAAC AAGCATTGGT 
    AAACGAATGT CTACTCCTTC AAGATCCAGT GCGCGCCCCT CACCGCCTTT 
    CCCTTCCACC GGTTCATCTC ACTCGACAAC AAGCAACACC TGTAAACAAA 
    TCACAGAGTC AAACACAAGC ACTATAACTA ACGAATCGGA GATCAAACCG 
    TGCGTGTATA TATTACCTGT ATAACACTAG CGTGATCGCC TCTCGAATGG 
    TGCGGTCCAA AGACAGCCCA AGTACCGGGC CAATGAGTTC CATCACTCAT 
    CCAAGTAGCT TTAGGAGCTA CTAAAGCAGG CCTTGGTTCC TTAATTTGAT 
    CCTCTTCAAC TTTCACCTTC CAATGCTTCC ATTTCTCTAA AGCTTTAATC 
    TCTTCTTTGC TATTAAACGC ATCCAATCTC CTTCATCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11588029 [Map]; Strand: c
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT13850 - 5-prime edge 
    CGCTTTGGTC AGAGCCTCGG CTATAATGTC TAATGGACCG TTCATCTTGA 
    TCTTGGACTG TGACCACTAT GTCTATAACT CAAGAGCTTT TAGAGATGGG 
    ATCTGTTTCA TGATGGACCA TGACGGCGAC CGTGTTTCCT ATGTTCAGTT 
    TCCGCAGAGG TTTGAAGGAA TTGATCCATC TGATCGCTAT GCTAACAAGA 
    ATACTGTTTT CTTCGACATT AATCTGCGAG CTCTCGATGG GATCCAAGGT 
    CCAATGTATG TTGGGACGGG GTGTCTCTTC CGTCGAACCG CACTTTACGG 
    TTTCAACCCG CCTGATGTTT TTGTGGTTGA GGAAGAACCT TCTGGTTCCT 
    ACTGTTTCCC GCTGATCAAG AAACGCAGTC CTGCAACCGT AGCTTCTGAA 
    CCAGAGTACT ACACTGACGA GGAGGATAGG TTTGATATTG GTTTGATTCG 
    GAAGCAATTC GGTAGCTCGA GTATGCTAGT GAATTCGGTA AAGGTGGCAG 
    AGTTTGAAGG TAGACCACTA GCTACAGTTC ACTCAAGCCG GCTAGGACGC 
    CCACCTGGCT CTTTGACTGG AAGCCGCAAA CCGCTTGATT TCGCGACTGT 
    GAATGAGGCG GTTAACGTGA TCTCGTGCTG GTATGAAGAC AAGACTGAAT 
    GGGGGTTCAA CGTTGGATGG ATATATGGTT CTGTAACCGA AGACGTAGTG 
    ACTGGTTTTC GAATGCATGA AAAAGGATGG AGATCATTCT ACTGCGTGAC 
    AGAGCCAGAC GCATTCCGTG GAAGCGCACC TATAAACCTA ACTGATCGAC 
    TCCACCAGGT TCTCCGATGG GCTACGGGAT CAGTAGAGAT CTT

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR