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GT13864

CSHL Arabidopsis genetrap mutant lines

Original: GT13864

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13864

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12714724 [Map]; Strand: w
      • AT2G29760.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13864 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGCCAGAG AGAAACTCAT 
    GAATCATGCC ATCGATTTCA ATTGAGCTGC ATCCTGGTTC TTTCTTAAGT 
    CCAGTGACTC TCATATGCTT TCTCAGCTCA GAAACGTTTT CCCACTTACC 
    CAATTTAGCA TATATGTTTG ATAGGAGCAC ATGCGCGCCA TCATTCCTAG 
    GTTCCAGTTC AAGCAAACGG GTACAAGCCA TTTCAGCAAG ATTCAGATTG 
    GCATGGATCT TACAAGCTCC TAGAAGCGCT CCCCAGACAG AAGTGCTTGG 
    AGGAATCGGC ATCGCCTCTA TGAACTTCAC TGCTTTTTCC AAATAACCCG 
    AGCGGCCGAG AACATCAACT ATGCAAGCAT AATGCTTTTC CTCAGGGACA 
    ATACCATAAT TCGATTCCAT CTGGTGGAAT AAAGACTCAG CTTCATCCAC 
    CAAACCGGTA TGGCTACAAG CACAGAAGAC ATTGGTGAAG GTCACACCAT 
    TAGGCTTTAC ATTAGCCTCT TGCATTTTAT AAAACATATC AAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12714795 [Map]; Strand: w
      • AT2G29760.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13864 - 5-prime edge 
    CTTTCTCCCT ACTCTCTGGA GAAACGCTCA TCCTATGTCT GAGAAGGTTT 
    ACGGGAAGTT ACACGAGGTT ATGGAGAAAC TGAAATCAAA TGGTTATGAG 
    CCAGAGATAT CTCAGGTTCT GCAGATCATC GAGGAAGAAG AAATGAAGGA 
    ACAATCTCTA AATCTCCACA GTGAGAAGCT GGCTATTTGT TATGGACTGA 
    TATCAACAGA GGCTCCAAAG GTGATCCGAG TTATTAAGAA TCTAAGGGTG 
    TGTGGAGATT GTCATTCAGT GGCTAAACTA ATATCTCAGC TTTATGATAG 
    AGAGATTATA GTGAGGGACC GGTATAGGTT TCATCATTTC AGAAATGGGC 
    AGTGTTCCTG TAACGATTTC TGGTGATATT TCAGATTTAC TAAAGGTAAC 
    TCAGTCAATT TTGTATTTGT TCCACCTTTT TTGTGTATTA CAATCATATC 
    AAGACCAATC AGCTTAGTGA TTTGGACCCT TCTCTCTACC ATTAAGTGCA 
    CATGTTTTTC TAATCACTAT CAATAACCAC CTATTAGAGT AAACCAGTTT 
    GTTATTGTTC ATATGGTAGA AGCAGATTAG GTTTCGTTAA ATCTGATTGT 
    GATTACTTAC TGAAGAATTA TATATCTCAC AACAAAAAGA ACTTGAGACC 
    ATGTTGGCGC AACAGCACCA AAAACCCAGA AGATGGCTAA ACGAAATATG 
    CATTTCAACA AGTCTCCTAA GAATTTAGTA CAAGACAAGG CTA

AT2G29760.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 81 (OTP81); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 39055 Blast hits to 14294 proteins in 286 species: Archae - 1; Bacteria - 14; Metazoa - 160; Fungi - 158; Plants - 37962; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink).
Link
InterPro Scan - TAIR