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GT13868

CSHL Arabidopsis genetrap mutant lines

Original: GT13868

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13868

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7126455 [Map]; Strand: w
      • AT1G20570.1 - [+] show detail - Spc97 / Spc98 family of spindle pole body (SBP) component
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13868 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCAGA ACTAGCTCCT 
    CCTTCAGTGA GCGTGAATGA ATCCCATCTG GTAATGCCAC AAACACTACT 
    CTTTTCAAAT TCTTTTCGGC AAAGCAACTT AAACCCTTTT TCTCCGGAGG 
    TTAATTAAGT GAAAGGTCTC TTACAAGATT TGAAAGGTTT CTCTAGTCCC 
    TTCATTTTCT GGGACCGAAA GGAACAAACT TTCCGCGCTA AAAGTGAGAT 
    ACGAGTTTCT CATTTGTCTC AGTCAAGCCT TCATCTCACT CGACCATTTG 
    GGGGAAACAA GCCAAGGCCC GGGGGGAAAA ACTGGAAGTT AAAAAAAATC 
    ATCATCTTGA ATGATGAAAC TTGGAAAAGG GAAATTTCCA AATGATGACA 
    ACCCAAGGAA AAAAAATCTT TAAAGAGGGG TTTCTAGGGC CAGGGGTCTC 
    ATCAACTATC CTCAAGGAAA AAGTTTCCTG GATATTAAAA TCAAGCATAA 
    AATTTTTCCC TTTGAAATGG AAAAAACACA AGTGATTTAT TTGCAAGGAA 
    AAAAAAATTA AACAAGGGCA AGTTGTAACA AATTGAAAAG GAAGGAAAGG 
    GCAAAACCAA AACTCAATAA AGGGGGAGGG TTGGCCGGAA ATTAATTTTT 
    CAGTAAAAGG TTGAAAGTTT GTTTTGTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18710116 [Map]; Strand: c
      • AT2G45403.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT13868 - 5-prime edge 
    AACGTCTCCA TGACGTTTTG TGCGTGAATC TTCTTCACGT CGTCTTCGGT 
    TTACTCTTCA ACCGACTTAT GCTCCATTTT TCTCCGAGGT AAGCATCCTC 
    TTGTGCTCCA TTTTTCTCCG AGGTAACCAT CCTCTTATGG TGTCCTCTTT 
    TGATCACCAC CACGTCTTTT CGACGTTTTG TGCGTGAAAA TCTCTTCACG 
    TCTTCGTCGG CTATCTTTGC AACCGAACTG AACTCTGCTC CCTCTCTCTT 
    AGGTAAGCAG CTTCACACCC GTAAGCAAGC TAATATCCCT GTGTTGCTTT 
    CTCCAACAAT CACCTCAATG TGATCGTCAC ACGTACAAAA GTCACACCAT 
    TTCTTGGCCT TCTTTTGACT TTTGTCGCCC CTTTTGAAGC AAACTTTTCT 
    CCACGTTTTC GTGTTGTAGT CATCTTCACA ACTCAACACA ACGTTTTGAT 
    AATAAGCCTT GCTCTGTTTG TTACAACAGC GGCTTTGCCG TCTTGCGCTT 
    CACTAGGACG TTGTTGAACA AATTTTCAGA ACTCTCCTTC CACAACTCCA 
    AATCCACATT CGTTTTCTCC ATTGTCTCTA GAGAAGATGT CCTATCTTCT 
    TCATCACTTT TGGAGCCTTC CTCTTGAAGG TACTTCATGT GAATGTGTTT 
    GTGAAAACTG ATGGTACTCT CTCTTGTTAC CACCTCTTAT TTCTTCTTCT 
    TCCCTCTTCT TCTTCCTCTT C

AT1G20570.1

Model type
Protein coding
Short Description
Spc97 / Spc98 family of spindle pole body (SBP) component
Computational Description
Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: transferase activity, transferring glycosyl groups, tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80260.1); Has 1016 Blast hits to 914 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 173; Plants - 165; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45403.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34095.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR