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GT13894

CSHL Arabidopsis genetrap mutant lines

Original: GT13894

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13894

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14461691 [Map]; Strand: c
      • AT2G34240.1 - [+] show detail - Protein with domains of unknown function DUF627 and DUF632
        Distance: 0; Region: exon5 (3UTR)
      • AT2G34250.1 - [+] show detail - SecY protein transport family protein
        Distance: -368; Region: promoter
      • AT2G34250.2 - [+] show detail - SecY protein transport family protein
        Distance: -410; Region: promoter
    Flanking Genome Sequence: GT13894 - 3-prime edge 
    ACGGTAGAGG TTTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCCGA 
    GAGAAAACTA GTCTGAAAAG TTATAGTTTG TTTTAGGATC TGATGCATAT 
    ACGTTTGTGT GTCTCAAGAG AGATTGAGAA ACACATTGAG AAGTGGTGAG 
    AACACATTTT TATCAAAGTG AAAATTGTAA AATGCCTCTT AAAATTGTTG 
    CCGTCCAAAA AACAGACGTT AGGTGGTCGT TTAGATTTGA CTAATTGTTT 
    ATGTCGACAC CAAATCCAAA GCCCATTTGA CCCGCCTTAC AAAACAAAAC 
    ATCGGCCCAA TCTGTGTCCC CAAAAAAAAA AACTTTAAAG CAAACGGGGC 
    AAACCCGGAT TCTTAACCCT ATCGGGCCAA GAATTTTTTT CCCCCGCCCC 
    CCCAATTGGG AAATCCCCTG AAAAAAAAAA AAAATCCAAA AAGGGTTTAT 
    AGGGG

AT2G34240.1

Model type
Protein coding
Short Description
Protein with domains of unknown function DUF627 and DUF632
Computational Description
Protein with domains of unknown function DUF627 and DUF632; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34220.1); Has 93 Blast hits to 93 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34250.1

Model type
Protein coding
Short Description
SecY protein transport family protein
Computational Description
SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 4557 Blast hits to 4550 proteins in 2034 species: Archae - 275; Bacteria - 3091; Metazoa - 262; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34250.2

Model type
Protein coding
Short Description
SecY protein transport family protein
Computational Description
SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR