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GT13904

CSHL Arabidopsis genetrap mutant lines

Original: GT13904

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13904

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 263788 [Map]; Strand: w
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -6238; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1256; Region: intergenic
    Flanking Genome Sequence: GT13904 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGATCAGT ATTCAATATG 
    TGGGTTAGGT TTTTCAGTAT ATACATTCTT GGGTTGTGTA ATAGATTCGG 
    TTAATGAGAA TTCTAAGTAG TCAGTGATCG TAGTAACGAA TATGCATGAG 
    ATGATTTGGA TTCTGAATCT CATCGATCAG TTTCAAGATA TCTCCGTACA 
    TAATTCAGAC ATGCTACTAG TGAAGTGATA AACCAACCAT ATCAGGAGAA 
    ATAATAGAGG AAAGATAGAC CAAGCAAAAA TCTTGTGACT AAAGATTCCG 
    AGTCAGAGTC TTATCAAATA GATTTGCGCA TGTCGCCTTC TTGGGCCGCA 
    ATCTTCTACA TGTCGGCAAA TAAATGTCTT TTAATTCCAT TCAGACCAGC 
    TTTTATTACT TTTTGCTGTG TGTAATAATA CTATTATGAT GTAATAAAAT 
    GAGTTCTGTT GATAAAAGTC ACCTATGTTG ATTGGCTAAG TAGAAAAACA 
    CACACGGAAA TACGGAATTA TTAAATACAC CAAACAATAT GGATAAGTCT 
    ATAAGACGTA CGAGCCATCT TTTATTCATG TGGACTTCAT GCTTCTTGCA 
    CCTGAAGCCA ACGAAAGCAT GATTTGTTGG TCCTCCTCCT CAGTCCTCAC 
    TTCTCTTCCT CTTATTATTG CTTTTGCGTA TCGTCGTTTT CATAAAGCAA 
    ATCGAAGATG ATAAGATAAA TATATAAAAC AGTTTTGTTT TCACTCGTTT 
    TGACGTCGTA GATCTCAAAT CTTATTATCT TAAAGCCTTG TGTCCCCTCT 
    CTGGCCAACC GATTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 263860 [Map]; Strand: w
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -6310; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1184; Region: intergenic
    Flanking Genome Sequence: GT13904 - 5-prime edge 
    CTTTATCCCT GTACTGATCG ATATAATATA CATATTGTTT ATCATCAAAA 
    GGAGATTCAC A

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01580.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR