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Mutant Lines
GT13910

GT13910

CSHL Arabidopsis genetrap mutant lines

Original: GT13910

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13910

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 16566179 [Map]; Strand: w
- AT4G34710.2 - [+] show detail - arginine decarboxylase 2
  Distance: -3248; Region: intergenic
- AT4G34720.1 - [+] show detail - ATPase, F0/V0 complex, subunit C protein
  Distance: 1645; Region: intergenic

TTACCGACCG TTACCGACCG TTTTCATCCC TACATAAGAG AAAGAAAAAA 
AAACTCAATC AGTTGAGCCA TATGGCCCAT ATATATCCCA CATATCAATC 
AATCATTCAA CTGCTTCCCA AAGTCTAATA AATAAAACGA TTAAATATGT 
CAGAATCTAC CATATGAAAC TTATGTGGGT TGCCTTGTCC CACTCACTAT 
TACTCACAAT CCCATCGTCC ACGATGCCGT TCAATACGCG GCGAAACCTA 
AGCGCTAAAA CAATAAAGTC TCAAACATTA AAGGACAACT ACTCAATTGC 
TTTCATTTAG TTGTCGAATT ACCATAGAGT GAAAAGAACT CGTATCAATT 
AAGAACTACA CAATTATTTT TTATTTTTTT GTGTGTGAAA AACTACACAA 
TTTATCAATT TGAATTAAAA TAAAATCTCA TAAATTATAG TAGGATCAAG 
TGATCAAATA TCTCAAAAGT AAAGGAAATT GGTGATATAG CTAGCATGTT 
GATAGAATGT TTTTGCCTTT TTATCGCAAG ATCCTAGTTA TCTTTCTTTT 
TCTTCATTAT TCCATTCATC CAACTCGACA AATTCTTTAA ATTCTATATA 
ATACGATAAC AATTCCTATG ATCTTCACTC TCCAAAGAAT CAAAACAAAA 
AAAAAGTTGA CATGGACCAA AAAAGCTTTT TCCGGTTGAT TTTTCTCATA 
GTCACAGCTG GTTTCATCAT CTCTTTCACT TCCACTAACT TCCCTCACGC 
GCCGACAAGG TTTCTTGAT

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 9988628 [Map]; Strand: c
  - AT5G27950.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: 638; Region: intergenic
  - AT5G27960.1 - [+] show detail - AGAMOUS-like 90
    Distance: 3057; Region: intergenic
Flanking Genome Sequence: GT13910 - 5-prime edge
```
TCCTACTTTC TCCCTGTGTT TGACGTAGTT GTTATGGGTT TGGCCTTTGC 
GTAATGATAT GTTGGCCTTG GGTTGCATGG CTTGAGATGA GTTGCATCAC 
ATCATTAACA TAAAGATCCT CTGCAAGGAC CACCAAGGCG TAAACTCTAA 
GATGATTCTC CAAACCTTGG ATTCCAACGC TTCGGAGAGT GTTTCTTTTG 
GGATTGAAGT ATAAAACATA AAAAGGTTCC CCACGACTAT ATAATTGAAA 
AAACAATTTC ACCGGTAGCA
```

AT4G34710.2

Model type: Protein coding
Short Description: arginine decarboxylase 2
Curator Summary: encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.
Computational Description: arginine decarboxylase 2 (ADC2); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 1 (TAIR:AT2G16500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G34720.1

Model type: Protein coding
Short Description: ATPase, F0/V0 complex, subunit C protein
Curator Summary: vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)
Computational Description: AVA-P1; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G27950.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G55550.1); Has 10282 Blast hits to 9806 proteins in 314 species: Archae - 0; Bacteria - 8; Metazoa - 4569; Fungi - 1388; Plants - 1826; Viruses - 0; Other Eukaryotes - 2491 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G27960.1

Model type: Protein coding
Short Description: AGAMOUS-like 90
Computational Description: AGAMOUS-like 90 (AGL90); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 36 (TAIR:AT5G26650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR