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GT13914

CSHL Arabidopsis genetrap mutant lines

Original: GT13914

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13914

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 138345 [Map]; Strand: w
      • AT2G01260.1 - [+] show detail - Protein of unknown function (DUF789)
        Distance: -539; Region: promoter
      • AT2G01260.2 - [+] show detail - Protein of unknown function (DUF789)
        Distance: -539; Region: promoter
      • AT2G01260.3 - [+] show detail - Protein of unknown function (DUF789)
        Distance: -542; Region: promoter
      • AT2G01270.1 - [+] show detail - quiescin-sulfhydryl oxidase 2
        Distance: -986; Region: promoter
    Flanking Genome Sequence: GT13914 - 3-prime edge 
    GACCGTTACC GACCGTTTTC ATCCCTATCA ATGAATGATG AATGTAGTTG 
    GTGTACATGC ATTAGTCGAA TCTTCAATGG TAGTATAGTT TTTGATTACT 
    CTTGAACATT GTGAAGCTTA TCTATGAACA AAAAAAGAAA GACCAAATGT 
    TTTACAGCCT TTCTTTTTTA TTTCTTTATA ATCTTGTCAG CATCTAGCAA 
    GCAAGCATCG AGTATCAACC ATTAAATTAA AGAGCCTCCT AATATACATA 
    TGGCCTTTGG CTTTTGCCAA TGTTTAACCC CTTTATATTT CCCATAGTCA 
    CATATTTCTC ATCAGATTTT AAAATGTTAC ATTCATAACC CCAAATCATT 
    CCTATGCACC ATCTACATTA TGCATCTGAG CAGTCTAAAA TACCTTGCAT 
    TACCGTATGA TTAACTTGTT TATAAGTAAG CGTATAACTG AATTACAAAG 
    AAGTTTCAGG TAAAACTGTA ATCAATCATC AAAATGAAAA GGACCAAAAT 
    GTAAAAACAC TAACTTATGA GGGATTCATG TGTTATTCAA TGGTTTTTGT 
    CTCTCCCCCT CCAATTACTA ACCAATCGTC TTTCTCTCTT CATTGACCCC 
    TTTTTTTGAA ATAACCAAAT CTCTCTCCAT TTCACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18572153 [Map]; Strand: w
      • AT4G40060.1 - [+] show detail - homeobox protein 16
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT13914 - 5-prime edge 
    TTCCATCCTA CTTTATCCCT GACCTTAGCT TTGATTTTAC TAATCTGCAA 
    CCAAAAACTT TAAAAATCAA ACCTTTTTGC ATTTTCGTCT CTGAAGTTTC 
    AATTTTTATG GTTTAAAGTC TCTAATATTG TACCTCTTGG AGAAGAGAAT 
    CATTGTCACG GCGGAGAGAA TCGAAATTGT GGCGGAGAGA ATCGTATTGA 
    CCCTTAAGAA CACCGTAATC TTTTTCAAGC TGTTTTGTTT TCCACCGTGC 
    ACGACGGTTC TGAAACCAAA CAGCTACTTG ACGAGGTTGA AGTCCAAGCT 
    CTTGTGCTAA TTTAGTTTTC CTCTCAGGTT CGAGTTTATT CTCAAGTTCG 
    AAATTCTTCT CAAGAGCTTT GACTTGGTCA ACTTTTAATC TTCTCTTCAT 
    CTAACTCGA

AT2G01260.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF789)
Computational Description
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 265 Blast hits to 263 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01260.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF789)
Computational Description
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01260.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF789)
Computational Description
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G15030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01270.1

Model type
Protein coding
Short Description
quiescin-sulfhydryl oxidase 2
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.
Computational Description
quiescin-sulfhydryl oxidase 2 (QSOX2); FUNCTIONS IN: thiol oxidase activity; INVOLVED IN: oxidation reduction, cell redox homeostasis; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: quiescin-sulfhydryl oxidase 1 (TAIR:AT1G15020.1); Has 2833 Blast hits to 2194 proteins in 312 species: Archae - 22; Bacteria - 32; Metazoa - 1533; Fungi - 396; Plants - 476; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G40060.1

Model type
Protein coding
Short Description
homeobox protein 16
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR