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Mutant Lines
GT13929

GT13929

CSHL Arabidopsis genetrap mutant lines

Original: GT13929

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13929

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 2; Position: 176330 [Map]; Strand: w
- AT2G01410.1 - [+] show detail - NHL domain-containing protein
  Distance: 0; Region: exon1 (CDS)

TCCGACCGTT ACCGACCGTT TTCATCCCTA GAGGTCTTCT TCTCCATACA 
CACCTTTGGT GGTCTTCCCA ATTCTCTTGG CCGCCTTGTT CCTGTTACTT 
CTGATTCCCT CCTCCGCCGA TAACCGCCAC GTTATCAACT TGCGATCGCC 
GGGACTCTAC CCGGAGGGAC TAACCTGGGA TCCAAGGGAC CAGCATTTTC 
TAGTCGGTTC TCTCCACAGC CGCACAATTC ATTCCGTCTC CGACGCTGGA 
GTCATCGAAA CCCTAATCTC CGATCTCGAT CTACCGGAGA ACTCCACTAT 
CCTCGGTCTC GCCGTTGACT CTACTAATCG CCGTCTCCTT GCCTGTATCC 
AGAGTTTGCC GCCTCTCCCT CCCTTCAGTG CCCTAGCCTC CTACGATCTC 
CGCAGCGGAG GCCGTCGTGT ATTCCTCTCT CCTCTCCCGT CTCTTCCCGG 
AGACGACGAA GACATCGCTC GTGATGTCGC CAATGACGTG GCGGTTGATT 
TCAAAGGAAA CGCTTACGTC ACCAACTCAG CCAAAAACTT CATCTCACTC 
GACCAACTGC TGTTGCCCTG CTCGCGCCGT CGCCGCAGTT CGGCTTGCCC 
CCACTCGATT GACTGCTTCA TCT

5 prime edge [+] show sequence

Chromosome: 4; Position: 12890366 [Map]; Strand: c
- AT4G25110.1 - [+] show detail - metacaspase 2
  Distance: -104; Region: promoter
- AT4G25110.2 - [+] show detail - metacaspase 2
  Distance: -105; Region: promoter
- AT4G25120.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: -328; Region: promoter

CTTTATCCCT GCCTGCACAT ACATTAACCA TGTCGATGGT CTTATAAGAA 
CAGCTTCATA TGACTAGTAT GGTTGGTAAA ATTATAATTA TAAATAAAAG 
TCAAGCAAAC TCATTAGAAT CAAAGTCAAC TCCATTCTAA TTAGTTCATT 
CGCACTATCA AATCCAAACT TCTGCAATGA AGGAACAATT ATAATTCGCA 
ACTTGCTAAT TTAACTTGGG TTGTATATAT GCAAGTTGAG ACGACTTCAT 
TTGATCATCA AACAAAAGTC TTGACGAATA CATTAGCGGA TAAGCTTAAA 
GTCGTCGAAA GAATTTTCTT CCTTGCCTTA TTGGCATCTT CTTCTAAAGT 
TCCAATGCTT TGATCATTGA TGATTTTCCC AGCATCAGAA ACTAAAGGCT 
ATAATCTGCA ACTTTCAAGA AACTTTGGGT GGAAATTGGA TTTCCCGAGA 
AAAGAAAAGG AGTTTTGGGT TATTATAGAA AATAATGTTG TTGCTGGTGG 
ACTGCTCCAG CTGTCGTACG CCGCTTCACC TTCCTCCCGG AGCCACCCGA 
ATCCGCTGCG CCATTTGTCA CGCCTTCACT CTCATCGCCC CCGAGCCCCG 
TCTCCAATCT CACGCGTCGG CGAGCCCTTT TCCTTTCCCA ACTCA

AT2G01410.1

Model type: Protein coding
Short Description: NHL domain-containing protein
Computational Description: NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G25110.1

Model type: Protein coding
Short Description: metacaspase 2
Computational Description: metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 7673 Blast hits to 3913 proteins in 538 species: Archae - 9; Bacteria - 793; Metazoa - 961; Fungi - 920; Plants - 3202; Viruses - 585; Other Eukaryotes - 1203 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G25110.2

Model type: Protein coding
Short Description: metacaspase 2
Computational Description: metacaspase 2 (MC2); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 1 (TAIR:AT1G02170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G25120.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary: Encodes a homolog of the yeast SRS2 (Suppressor of RAD Six-screen mutant 2) helicase. The Arabidopsis SRS2 is a functional 3
Computational Description: SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 (SRS2); CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD-like, C-terminal (InterPro:IPR014017), Helicase, superfamily 1, UvrD-related (InterPro:IPR014016), DNA helicase, UvrD/REP type (InterPro:IPR000212); Has 26201 Blast hits to 22116 proteins in 2711 species: Archae - 259; Bacteria - 18888; Metazoa - 18; Fungi - 176; Plants - 81; Viruses - 13; Other Eukaryotes - 6766 (source: NCBI BLink).
Link: InterPro Scan - TAIR