1. Home
  2. Mutant Lines
  3. GT13932

GT13932

CSHL Arabidopsis genetrap mutant lines

Original: GT13932

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13932

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152578 [Map]; Strand: c
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -666; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13932 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGGTGTT TATATGCAGC 
    GTTCTTGGCT TATCCTCCTC GGAACTTCCG TCTGCTTGCT TCCTCTCTAC 
    ATCTACGCAA CTCCACTTCT CATCTCACTC GGACAAGAAC CCGAAATCGC 
    AGAGATCTCT GGCAAATTCA CTACACAAAT CATCCCTCAA ATGTTTGCGC 
    TCGCTATCAA TTTCCCGACT CAGAAGTTTC TCCAGTCACA GAGCAAAGTA 
    GGGATCATGG CATGGATAGG TTTCTTCGCT TTGACCCTTC ACATTTTCAT 
    CCTCTACCTC TTTATAAACG TTTTCAAGTG GGGGCTAAAC GGCGCAGCGG 
    CTGCGTTTGA TGTCTCGGCT TGGGGAATCG CGATCGCTCA GGTTGTTTAT 
    GTTGTCGGGT GGTGTAAAGA CGGTTGGAAA GGGCTGTCTT GGTTAGCGTT 
    TCAAGACGTT TGGCCGTTTT TGAAACTGTC GTTTGCGTCT GCGGTTATGC 
    TTTGTCTAGA GATTTGGTAC TTCATGACGA TCATTGTCTT AACTGGACAT 
    CTTGAAGACC CTGTCATAGC CGTTGGATCT CTCTCAATCT GGTTAACCGT 
    TAAAACCCTT CACAAACTCA AAGATTTACA TTCTTTTTCT GATAACTGAT 
    AACACTTTTG TTTCTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152483 [Map]; Strand: c
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -571; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT13932 - 5-prime edge 
    TATCCATTTG TCCCGCTCCA AACGCTTGTC CACATAACGT TTCCAACGCA 
    CTCGCCATTC CCAGCTGCAG TTTTTTTCTA GAAAGTTAGA GAAAACGCAA 
    GAAACAGAGG AGGAAAAAAG CAGAGTAGAG GAAGGTTATT TTAATCACCA 
    AGAAACCAAA GGAGAAATTA GAGACGACGG AGAGAGCGAT GGCGACGGCA 
    GAAAGCTCAA GATCGCCGAT ATGGCCAACG AAGATGCTTG TGAAGGAGTT 
    AACACCGTAA TTACAAAGAA TGTTGAAAGC TATAGGTGCA GCTATTTCCC 
    AAAGCTTAGA CGTTTCAACC ACACAAACAA GTTTAGCATC TCTAAAGATT 
    TGAATGGGAG GAAAATCATC GTCTCCGGTG GTTTCACCGA GCATAGTTGA 
    CGGCGCGTGG ATAAGCTTGG TCGTCTCATG CTCTGTTTCG AACACAGAGA 
    GTTTGACGAC AAGCGGAGAG GATGGACCG

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR