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GT13964

CSHL Arabidopsis genetrap mutant lines

Original: GT13964

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13964

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13964 - 5-prime edge 
    GGGGGGGGGG AGGGGGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 799561 [Map]; Strand: w
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: -413; Region: promoter
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -413; Region: promoter
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -54; Region: promoter
    Flanking Genome Sequence: GT13964 - 5-prime edge 
    CCTACTTTCT CCCTAATTCT ATGTGCTATA CTCTAATACT TAACAACTAA 
    TCGGAGCACT AAGAATATAC TAATAAAAAT CGCTTAGAAA GGCAAAACAA 
    ATTACTATCA TCAGATTTCT TCCCCAATCT TCTTCTTCAT ATCCTTGAAG 
    GAGAGAGTAT AGAGAATCCG ATCCAAAAAC CCTAAACCCC ATTTCCCGCG 
    GATTTTCTCC CAAGCTGATA CGGAGATCAA ATGGGAGATC CGTTGGAGAG 
    GTTGGGTTCT CAGGCATCAA TGGCTACTGA GTCTGTCATG AAGGAGGACT 
    TGTGTTTAGA GATCGATCCT CCCTTAACTG AATCCGTTGC CACCGCTGAA 
    GATTGGCGTC GTGCTCTCGG TAAGGTTGTT CCCGCCGTCG TTGTACTCCG 
    CACAACGGCT TGTCGCGCCT TTGATACCGA GTCCGCCGGT GCTAGCTATG 
    CTACTGGTTT TATCGTTGAT AAGCGACGTG GGATCATCCT CACCAATCGC 
    CATGTGGTTA AGCCAGGTGC GCCTTTTGAC TTGTTGAGAA ACGAGTGTCA 
    GAAGATTAGC TGGGTTTCAA GAATTCATAA GAGATGATGT TATTGTTGTG 
    GAACTGTAGA ACTGATCATG GTTTTTCAAA GTATTTGTTT TAGGATTGTT 
    CGATTTTCCA TAGGGATTAG GTACATGTTT ATCTAGAATG GCTTAGCTCG 
    ATATGGATAT GGAGATTATT TG

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR