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GT13973

CSHL Arabidopsis genetrap mutant lines

Original: GT13973

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13973

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25294944 [Map]; Strand: w
      • AT1G67500.1 - [+] show detail - recovery protein 3
        Distance: 0; Region: exon9 (CDS)
      • AT1G67500.2 - [+] show detail - recovery protein 3
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT13973 - 3-prime edge 
    TCCGGCCAAG GAGATTTGAT TTGGATGATT GTCCGGGACA AAGTGATTGA 
    CTAATTGGTT ATTACAAAGG GAGATCTTCA AATACTTGAT GCTTTGCGTT 
    ATACTGTGTG GTAGTTTTAT CTTATTTTTT ATCACAATAC TGAAACAATG 
    TATCAGGCAA ATTCAAGTGT TGCTGCAAGC GTCAGTTTTC CTGTTTGGAG 
    CTTGTCTACA TTTCCAGGCC AGTGGATGTG GAATCTCTCT GATGAATCTG 
    ATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19615278 [Map]; Strand: w
      • AT3G52905.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT13973 - 5-prime edge 
    CCTGGTACAG GTTTTCAATA GCGATGATGG TGACAAAATT GATCAGAGAG 
    GATTTGCATT TTTGAAAATT ACTGTTAAAC AAATGTTGTA GTATGTAGAC 
    ACTGAATCAA AGGTACCTCA ATGGAGAAGC AACCATATTT GAAGGATCTG 
    AGATAGCTAA TCCAACATAC TTATCACCAA CATCTAAACC CAGAAACCGA 
    CCAGGGACTG ACACTTTGGT CTTCAGCGCA TTACCCAATA AGCTCAATGG 
    CTTCACATAC TTCATTTCCC GATACAAAGT AAGTGAATCA AACTTCCAAA 
    ACACTTGTTC AAATCAAGAC TAAAAATTCA CATATCAATT GCATAAATTT 
    GAGAATTATT GTACAAAAAA AACTTTAATC AGACCATCAA ACAAACATTT 
    CGAAAAAGGG TTTTAGAAAT TAATCAGAAA GTTTAAATCT TGACGTACTT 
    TAAAGGCGGA AACTTTCTGG CGCCGGAGCA CGGAATCTGG CGAGAGGAAA 
    CGACAAATGG TTCTGCTAAA TGTCTTCGCG ATTGAAGCAA GCAAGCACAA 
    ACCCCAAGAT TGTGAATTAG AGATGGACCG GAAAAGGTTT ATTCCGGTTA 
    AGTTCGAGAC TTCACCGTCT AATCAATCTA TACGATGCCG GTGATTATCA 
    GGGTTTTGGT TTTACATTAT ACCGGGAACC GGTTAATTCG AGGTGGTTTA 
    ACTGGTTTCC CAAAATTGAT TCGGTTTAGC TTAAGTGAAA AGCTCAAGTA

AT1G67500.1

Model type
Protein coding
Short Description
recovery protein 3
Curator Summary
Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).
Computational Description
recovery protein 3 (REV3); CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 6179 Blast hits to 5524 proteins in 1389 species: Archae - 386; Bacteria - 883; Metazoa - 612; Fungi - 614; Plants - 201; Viruses - 2029; Other Eukaryotes - 1454 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67500.2

Model type
Protein coding
Short Description
recovery protein 3
Curator Summary
Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).
Computational Description
recovery protein 3 (REV3); CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1).
Link
InterPro Scan - TAIR

AT3G52905.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, response to DNA damage stimulus, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 4393 Blast hits to 4393 proteins in 1559 species: Archae - 0; Bacteria - 3177; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1190 (source: NCBI BLink).
Link
InterPro Scan - TAIR