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GT13993

CSHL Arabidopsis genetrap mutant lines

Original: GT13993

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13993

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7303824 [Map]; Strand: c
      • AT4G12290.1 - [+] show detail - Copper amine oxidase family protein
        Distance: -581; Region: promoter
    Flanking Genome Sequence: GT13993 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATAAAGA CAAAGGGAAC 
    AAAACTGCAT AGATGACGAA AGCTTGTACG GAGGAGATAG CACTCTCCAA 
    TCAATTCTCA GCCCTTGATG GCTTAGAGAC ATCAAGATGA AGACATGTGT 
    AAGGGTTTAT CTAGGGTTTT AGTTCACATA TGTCCTTGTA TAAAAACCCA 
    AACAATAGCC GCTTGTAATC TCTAAGAAGC AGAATGAATG AAAACCAAAA 
    CTTTTCATAA AGATTTATAA AATTCTTCAT TATCGACATC ATGAGCCTCT 
    TGGGCCTTCA TCATTCTTCA AAATCATACC ATAGTTTATA GTTTTTACTG 
    CGTACCACAA ATATGGCACC GAACATATAT CATTATAGGT TTCTAGGAGT 
    TGACAAATGT TTAGTCCTCC ATTTTTCAAT CGTCAAAGAT AAGATTCCTT 
    ATAATTCGTG TACATAATTG TTTTTTTATA TATACATAGC ATGTGGTAGA 
    TATTTTATTT CGGGATTGAT ATTTGTATAT CTCTTTATAC TGTGAGTGTG 
    AGGTGACGTA CTTAGTTAAG GCTCACTAGT TTCTTTAAAT TCTATATAAT 
    ACGATAACAA TTCCTATGAT CTTCACTCTC CAAAGAATCA AAACAAAAAA 
    AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 190236 [Map]; Strand: w
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -2609; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -3643; Region: intergenic
    Flanking Genome Sequence: GT13993 - 5-prime edge 
    TCTCCCTGAT CCGGGAAGTC ACCGACACTG AGAGGTGTGT TTCCTTCAAT 
    TGACTTTGAT GTTTGAAGGC ATGCATAGAT GGTAACATGT GTTACGATAT 
    AATTGTCAAA ATAACATCCT TTTTGTGATA TGAGGCGTGT ATTGATGTGT 
    GTACTTCAGG TTCGCTTAGA AAAACCATTG AGAATGATGT CAAGACTCTT 
    GTATTCTGGT TGGATAAGAC GTATGATATG ATCATTGCAT GTTTTATCAT 
    ATAAAGTTTT TTAAGAATAG AAACAAGGGT CTATGAATGT AAAAAAAGTT 
    ATACATAGAA CAAAGTCAGA CACTAGATTA ATTATAGGCC ATTTTTTATT 
    TTAAACCCAC ACATTAATAA TCGAATTTAT AATGCTAATC AGAATATTTA 
    GTGATATGTA TCTAGTTTGT TAACAACTCT AAGAAACTTC GATATCGGAG 
    ATTGGAGACC GGGGAAGAGA GAGTTTATGA CGGAACTTTA TTAAATCCAA 
    AATGTTGTTA CAAAGCGAAA TGTAATCATA CTTGAGCTTA TATACTTAAA 
    GATTAAATGT GAACATTGAA CCAAGATCAG GTTAACCAAT AAGCTGAAGT 
    AACCGGTCCA TGTAGTATAT ACTCAATAAA CTCTACATTC TTTTACTTCA 
    TTTTCTTC

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12290.1

Model type
Protein coding
Short Description
Copper amine oxidase family protein
Computational Description
Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Link
InterPro Scan - TAIR