1. Home
  2. Mutant Lines
  3. GT13999

GT13999

CSHL Arabidopsis genetrap mutant lines

Original: GT13999

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13999

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18601265 [Map]; Strand: w
      • AT3G50160.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: -256; Region: promoter
    Flanking Genome Sequence: GT13999 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATCTTTTT CCTATGGAGA 
    ATTAGTCAAT CTCATTAGTC TTCTTATAAG AGTACGTACT ATACGTTCTA 
    TTTGATGGTA GTTAGTATGT TTCCGTCCCA CTTGTTTATA TATATACATA 
    CTATTATGAT ATTTTCTATA CTAGTTTGAA TGTTTCAATC CCACTCGACG 
    ATGCATGGAT TAAAACATCC AAACTACTTG TATTATGTAC AATACCCTAT 
    TGACAAGACT TCTTTTATAT TTTGTATTTA TAAGAGTTTT GTATAGTTAG 
    AAATAAACAT AGCGTGGCCA GATTACTTCA TCTCACTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18601252 [Map]; Strand: w
      • AT3G50160.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: -243; Region: promoter
    Flanking Genome Sequence: GT13999 - 3-prime edge 
    ACCGACCGTT TTCATCCCTA TCTTTTTCCT ATGGAGAATT AGTCAATCTC 
    ATTAGTCTTC CTTATAAGAG TACGTACTAT ACGTTCTATT TGATGGTAGT 
    TAGTATGTTT CCGTCCCACT TGTTTATATA TATACATACT ATTATGATAT 
    TTTCTATACT AGGTTTGGAA TGTTTCAATC CCACCTCCGA CGGATGCATG 
    GATTAAAACA TCCAAACTAC TGGTATTATG TACAATACCC TATTGACAAG 
    ACTTCTTTTA TATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18762807 [Map]; Strand: c
      • AT3G50560.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13999 - 5-prime edge 
    ATACTCAGGT TGGTCACTCT CTTATATAGT CGGGTAAATT GTGCAGGTAG 
    GTTATCTAGA GTAGCAGAAG AGATAGCAAG AGAAGAGAAA GCACAAGTGT 
    TTGCTATAAG AATTGATTGT GCAGATCCAA GAAGTGTAAG AGAAGCCTTC 
    GAAGGAGTAT TGTCGTTAGG GTTCGTGGAG GTTTTAGTGT ACAATGCTTA 
    TCATTCATCT CACTCGA

AT3G50160.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50150.1); Has 1156 Blast hits to 1033 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G50560.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G10050.1); Has 28315 Blast hits to 28305 proteins in 2489 species: Archae - 298; Bacteria - 21162; Metazoa - 1441; Fungi - 797; Plants - 407; Viruses - 0; Other Eukaryotes - 4210 (source: NCBI BLink).
Link
InterPro Scan - TAIR