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GT14056

CSHL Arabidopsis genetrap mutant lines

Original: GT14056

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14056

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 623188 [Map]; Strand: c
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 243; Region: intergenic
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: 1904; Region: intergenic
    Flanking Genome Sequence: GT14056 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTAAC TCTCATATCG TCCATACGTC 
    TGACAAATCT ACGCTTGATA AAAAAGGTAC AGCTACAACA TAAATTTAAA 
    GGTATTCTTT TGCATCAACG TCTACTGACT AAAAATACTT GTTTATTGTA 
    TAATGACTCT AGTTTTACTT TTAACAACGA AGAGAAAGGT GGCAGAATTT 
    TTTTAATATT CCAATGGTAA AAAAGCATCT TAAAAGGAAG CCTATGGTCA 
    GAGTCTCATT GACACATCGG TCTCGCTTGT AATACGAAAA ACTCAGCCTA 
    TCTCACTCAC ATTACTTTTT TCGAAATTTT AATTCATATA TCGGTTTCCG 
    CATATATTTA ATTTTTGTAT TCAAAGCTTA TTAAAAAATC GGGAAAAAT

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01470.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 1;3
Curator Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational Description
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR