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GT14106

CSHL Arabidopsis genetrap mutant lines

Original: GT14106

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14106

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2939255 [Map]; Strand: w
      • AT1G09100.1 - [+] show detail - 26S proteasome AAA-ATPase subunit RPT5B
        Distance: 0; Region: exon1 (CDS)
      • AT1G09110.1 - [+] show detail - pre-tRNA
        Distance: -162; Region: promoter
    Flanking Genome Sequence: GT14106 - 3-prime edge
    GACCGTTTTC ATCCCTACTT ACAGTGATTA ACTCAGGCTG CTAAGGGAGA 
    TGGCAACGGC GATGGCGGAG GATACGAGCT TCGAGGGAGA CCAACTAGCT
    TCCATGACTA CTGATGACAT CGGTAGAGCT TCTCGTCTCT TAGCCAACGA
    GATTCGCATC CTCAAGGTCA CCACCCTCTC TCTCTTCTCT CTATATTTTT
    AATCTGCTGG CTACTTGGAA CTAGTATATT TCTTCATTCA AAGCTCACTA
    TTACCTTAAT TTGATTAGCG ACACTTTGAT TAGTTTTGAA GAAGATGGAT
    GATGTCTGAG AGCAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2939427 [Map]; Strand: w
      • AT1G09100.1 - [+] show detail - 26S proteasome AAA-ATPase subunit RPT5B
        Distance: -101; Region: promoter
      • AT1G09110.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14106 - 5-prime edge
    CTTTAATTTA ATAACACATG TATTGTATTA AATATTATCA CAGTCAATAC 
    CCAACAACAA ATCCGATGTC GTCCAGCGGT TAGGATATCT GGCTTTCACC
    CAGGAGACCC GGGTTCGATT CCCGGCATCG GAGCGTTTTT GGTTTTGTAT
    CCTTTTTATT TTTTTCACAA TGTATCTTAT ATCTATTTTA AA

AT1G09100.1

Model type
Protein coding
Short Description
26S proteasome AAA-ATPase subunit RPT5B
Curator Summary
Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.
Computational Description
26S proteasome AAA-ATPase subunit RPT5B (RPT5B); FUNCTIONS IN: ATPase activity, calmodulin binding; INVOLVED IN: glucose mediated signaling pathway, proteasomal protein catabolic process, embryo sac development, pollen development; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 5A (TAIR:AT3G05530.1); Has 33470 Blast hits to 31156 proteins in 3185 species: Archae - 1434; Bacteria - 12401; Metazoa - 4942; Fungi - 3663; Plants - 3251; Viruses - 53; Other Eukaryotes - 7726 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09110.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Glu (anticodon: TTC)
Link
InterPro Scan - TAIR