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GT14133

CSHL Arabidopsis genetrap mutant lines

Original: GT14133

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14133

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10431823 [Map]; Strand: w
      • AT1G29790.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon2 (3UTR)
      • AT1G29790.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon2 (3UTR)
      • AT1G29800.1 - [+] show detail - RING/FYVE/PHD-type zinc finger family protein
        Distance: -778; Region: promoter
      • AT1G29800.2 - [+] show detail - RING/FYVE/PHD-type zinc finger family protein
        Distance: -778; Region: promoter
    Flanking Genome Sequence: GT14133 - 3-prime edge 
    CCGTTTTCAT CCCTAGAAGA CTCCATAAAT TATGTATACC ACCATTTAAT 
    CAGTCTCTCT CTAACAACAA TAGATCAAAT CTTAGCTTAC AATTCCCCTA 
    GTCCCTCTTT CGCATAAATA ACATCATTGC TTGTGTGCTT ACAGCTGGAA 
    AAAGCTATAT CTGAAAGCGT CGAAGAATCT TGCTTTCCAA ATCTTCAACA 
    ACAGTAAGCT GTTTGCTAAC AAACTCGAGG AAATAGCCCT GCAAAACAAC 
    CCACAACTTT GGATCAGGAG TCCAACCAGA AACAAGCACA AGCCCGGAAC 
    TGACAGACAA AACGAAAGAC ACAACATCCA AGTCTCCAGC CACCGAAGAA 
    AAGTTTCTTA AGAACAGAGT AAATGTCTAA GCGCTAATAC AAAACCGGCC 
    ATTGAGGCAT TGATAACTTC ATCT

AT1G29790.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G40830.2); Has 271 Blast hits to 269 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G29790.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G40830.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G29800.1

Model type
Protein coding
Short Description
RING/FYVE/PHD-type zinc finger family protein
Computational Description
RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 3851 Blast hits to 3761 proteins in 321 species: Archae - 0; Bacteria - 225; Metazoa - 2022; Fungi - 664; Plants - 368; Viruses - 3; Other Eukaryotes - 569 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G29800.2

Model type
Protein coding
Short Description
RING/FYVE/PHD-type zinc finger family protein
Computational Description
RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G43230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR