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GT14156

CSHL Arabidopsis genetrap mutant lines

Original: GT14156

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14156

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23779643 [Map]; Strand: w
      • AT5G58880.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 139; Region: intergenic
      • AT5G58890.1 - [+] show detail - AGAMOUS-like 82
        Distance: -1189; Region: intergenic
    Flanking Genome Sequence: GT14156 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTATGT GCAGCGTTAC 
    TTGTTTTCTT CATCATGATT CTGTGTGTTA GTATCATCAA TGTGTTAATT 
    TTCTGCAAAA TAGTAAGCAT TTGGTTATAC ATAGGGAATA TCAACACTTT 
    TCTGATCATC TATGCTTTCT TCTCCATTTT TGAATTACGA CTAACCTAAG 
    ACTCTGTTTT CGTGTTTTGT TGTTTGGATC TCCGCATTTT GCATTTCCTC 
    TATTACTTTC TTGGATTCTT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23779730 [Map]; Strand: w
      • AT5G58880.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 226; Region: intergenic
      • AT5G58890.1 - [+] show detail - AGAMOUS-like 82
        Distance: -1102; Region: intergenic
    Flanking Genome Sequence: GT14156 - 5-prime edge 
    TAAGGTACGG TACGCCACAA GGAAAATGTG TTAAGAATTC TTTTTGATCC 
    ATAACAGGTG AAACATTGTG TTGTATCATT ATTTAATGGA CTTTTTGTTT 
    ATTATACAAC TTGTAAAGGC AACTCATTCT TTTGTATATA CTGTATAGAG 
    ATGAATAAAT CTTTTGAATA TATACTCACA GAAGAACTAC TAGCATTCAT 
    TTCTCTCCTC TACTTCTTTG TTTTAATGTT AAGATTATAT TAGCGAAACA 
    TATTACAACC TAAAGCTACC CATATCCATA AAAAACGAAT CGAATCGAGA 
    AAGTTTTTCG GCATACAACG GATAAGTAGT ACAACAACGG CCCTAAGAGC 
    TGCCGGCGTT AAAGGTGACT ATTATATAAC AAGATTACAA TAAGTGTATA 
    AATATTAAAC CGTCTAACTA ATAAGGAAAG AAATAAATTT AACTGTGTTT 
    AACATTTTTG TCTTTCTGGG AAGCATCTTC AAGTTAGTAT ATTTTCCCTT 
    TTGACAAACT AAATATTCCC AATTTAATTC TTCTTTCCTA AACTTTCATG 
    ATCATTTAAA TG

AT5G58880.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58890.1

Model type
Protein coding
Short Description
AGAMOUS-like 82
Computational Description
AGAMOUS-like 82 (AGL82); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G55690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR