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GT14172

CSHL Arabidopsis genetrap mutant lines

Original: GT14172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14172

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14172 - 3-prime edge 
    ATATCCCGTT TTCGTTTCCG TCCCGCAAGT TAAATATGAA AATGAAAATG 
    GTAGAGGTAT TTTACCGACC GCTACCGACC GTTTTCATCC CTATGTGGGT 
    GTACCCCCTT TGGAAATCAT GCCTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 799230 [Map]; Strand: c
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: -82; Region: promoter
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -82; Region: promoter
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -385; Region: promoter
    Flanking Genome Sequence: GT14172 - 3-prime edge 
    GTGGGTGTAC CCCCTTTGGA AACATGCCTT TTTAATCTAC GCACTCCTCT 
    CTGAAATCCC CATCGCGTGC AATTGTTTTT GTTTTCTTCT CTTAACCAGT 
    GTAAACCGAA ACCAAAATCA ATTCTAATTT AAACCTAACC GAAAAATCAA 
    TTTCAATTTC ATATAAGAAC TCCACTATCA AATTAACAAA TCATATAAAC 
    GTAAGTCTTT AAGTATAATA TTTTTATTAA ATCGCGGTAC AAGCCTAGTC 
    AGAATATACT GTTTTATTTT TTCCAAAACA TAAATTATAC TATAATTTCA 
    TTTTGTCTTA ACAGATATTT AATTTCATTC TATGTGCTAT ACCAGTGTAA 
    TTTCATTTTG CAATTGTTTT TGTTTTCTTC TCTTAACCAG TGTAAACCGA 
    AACCAAAATT ATTCTAATTT CAATACCAGT TAAACCTAAC CGAAAATTCA 
    ATTTCAATTT CAACCACTGG TTTGTTGGTT TCAGCTTAAA GGCAAGCTCA 
    AATAAACATT TCAATATCCG AATTTTTCTT AATTAAGAGG CTTATCGATT 
    C

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR