1. Home
  2. Mutant Lines
  3. GT14206

GT14206

CSHL Arabidopsis genetrap mutant lines

Original: GT14206

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14206

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 235597 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: 0; Region: exon18 (CDS)
    Flanking Genome Sequence: GT14206 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTCATG 
    GATGATAGCT CTGTTTCCCA CATCAGCCAT AATTTGGTTG GATCCGTGGT 
    ATGTACAAAT TCTAATATTT GTCTAGTTTT ACACTGAGAG AATATGCACC 
    GAGAAATTAT TGTTTGAAAA ATATATGCTT TGTGGGCTTA ATTTTTGGCA 
    GGTCGGATTT TGCAATCTAA TTAAAAGAGC AAAGGATGCG ACAAACGAAA 
    TGTGGGTTGC TGAGACAACA GAGAACTCAG TCTACTTCAT AAACGCAGAA 
    GCTGCCTACT CTTCTCACCT TAAAACCCGC AGTGCCCATA TCCAAACATG 
    GGCTAAGCTC TATTCTTCCA AATCCGTCGT TTCCCCCTTC GACTATCCTC 
    TTTCTATAAG TATTCGGTTC AAAAAGATTG TTCTATTGTA TTAAGCCTTC 
    TTGGTTTGCT CAATTTTCAG GTCATCCATG AACTTCGGCA AAGAGTCCTA 
    TTTATAATCG GTGCTTGTAA ATCACCTTCA TGCTGAAGAT AAATCATACA 
    CCACCTCTTC TCTTTTTTTT TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 235678 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: 0; Region: exon18 (CDS)
    Flanking Genome Sequence: GT14206 - 5-prime edge 
    GGGGTGCTGA AGCTTATAGC AAGAAGACTG TTTGAGATTT CCCCTGAATG 
    TTGTGTGGAT CCATCTGTCA CAAACACCCA CTGCTTCTTT TGTAGAACAT 
    CTGTGTATGC ATCTCCAACA TATACAACGT ACGCAGCGAT ATCAAATTCA 
    CTGAAGGACA TAATTAGAGA TGATAGAGTA TAGATTAGCA AAGTGCGGTA 
    AATAGTGTTT TATAAAAAGC TTGGACTACT GAGATTAACC TTGACAGAGG 
    AATTTCACCA AGATTTGACA AAGAGATTGG TTTACGAGGG TTGAAAAAAG 
    GCCTGAAAAC ATCATCAGGG AAATTGAACA AATTAATGAG ATAGATTCCA 
    GTGTCTACTA AAGAAAACCA CTTACTGAAA ATTTTCAGAA TCTTTTGGAG 
    ACAAAGGCTG CCATCTTGAG CTTGACCCTC TGGCATGTAA GTAAAGTGTT 
    TCTGAATCTG AGTTCATTGG TACTAGCCCT TTCATTATGT ATATTTTCCC 
    CTCCGTCAGC TCGGTTCTCT GTCACAGTAG TAGACAATGA TAACTGTTTT 
    AAGAATCTAC AAGAAAAAAG TTGAACAAGC TAATCGATGA TGCTCTTAAT 
    GCAAAAGTAC AGTGATGGGA ACGATTTTTT GATATGCATT TC

AT5G01630.1

Model type
Protein coding
Short Description
BRCA2-like B
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.
Computational Description
BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR