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GT14218

CSHL Arabidopsis genetrap mutant lines

Original: GT14218

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14218

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 467614 [Map]; Strand: c
      • AT2G01990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -890; Region: promoter
    Flanking Genome Sequence: GT14218 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    TTTATCTAAG ACAGCTTCCA AATCCGATGA TTCAATCCAT TCAACTTTTG 
    CTTCCCGTTA TGTCCGCAAT TTTTAAACGT AATTGAAATT TAAATATATA 
    TAATGGTTGA TTGCGTGATT AAATGTTATT AACAATATTG TGAAATCATT 
    TAAAAAAAAT ATTAAGTAAT CAATTTTTCG GAATCAATAA TCATGTGTGT 
    AATGAGCTAT GTGCACATAA TCTAAGATCA TCTTCAAATT ATAGTTGTTA 
    CAAATGATTA AAAAAAGGAT ATAAAACACG TTCATCTCAC TCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 472048 [Map]; Strand: w
      • AT2G02000.1 - [+] show detail - glutamate decarboxylase 3
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14218 - 5-prime edge 
    CTTTCTCCCT GGATAAACCA TCTTCTTGAA ATGAGCTAAA GAAAAGTAAA 
    GGGAAAAATG TGCAATGTTT TTGTTTTGTA GTTGAGTAAT ATGTGAAATT 
    AGAAGAAGAG GAGCAAATGG TATATATAGG GACGAGAATG GTTCTCTTCG 
    TTTTGTTTGC AACGTGAAAG GAAGCATCGC TGGTTTAAGG ATTCCTTTTA 
    TAACTTTTTA CTATCATTTA GTTTAAAAAT AGTAAATAAA TTATGGGCTA 
    CTTTAAAAAA TTTAAAATAG TAAGACCAAT AAATTATGGG CTACTTTAAA 
    AAATTTAATT TTCAAAACGA ATCATATCAT TTAGTTTGCT ATGTGTCTCT 
    TTTCCCTTAT TCTCACTCTC TCTTATTTTT TGTTAAGACG GACTGCTTAA 
    CCCGCTCTTC TAAACTTTTA TTTTCTAAAA TTACTTTTGT ATAACTGAAA 
    TCTGAAAAAT ACAAAATACT AAATATATTA AAAAAAACAC CTAAAACACT 
    ATTTTCTTCA AAGCAATTCT GTAATTAAAT ACTTTGTGTA TTTAATACTT 
    ATTATTT

AT2G01990.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02000.1

Model type
Protein coding
Short Description
glutamate decarboxylase 3
Computational Description
glutamate decarboxylase 3 (GAD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 2817 Blast hits to 2814 proteins in 863 species: Archae - 192; Bacteria - 1666; Metazoa - 146; Fungi - 354; Plants - 282; Viruses - 7; Other Eukaryotes - 170 (source: NCBI BLink).
Link
InterPro Scan - TAIR