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GT14221

CSHL Arabidopsis genetrap mutant lines

Original: GT14221

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14221

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94726 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: -66; Region: promoter
    Flanking Genome Sequence: GT14221 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAGCAAGTTC 
    AGTGTTAGAA GAAGCAGCGG AGATCTCTCT CCCTCTTTAT AGTTTACTTT 
    TGACTTACAG TAGAGAGAGT TTAGAGTTTT GAATTTGGCT CCGATGACGA 
    ATCGTCTTCC TCCTTCGCTG TACGTTCCGC CTCACCAGCG CCTTGGTTCC 
    GATTACGGCT TCAATCCTGT TCATNCTCAC TCGACGAAGN NATGNCTCCG 
    CTTATGATGA CCGCGTTTCC GAGGATCGCC AACCGGTTAA CTTCTTCTTC 
    ATCTTTTTTT CATGCATCTC TGAGCTTATT GATTGATGCT CTTACAATGG 
    CGATTCTAGT TTTCGATTTG CTCTCGAGTA GTATTTTATA AAAATCCCTT 
    TATCTTTCTA CTGGAACCAT ATCAATTTGC AGCAGGAGGG TACCTTTCAC 
    TGTGCCGACT TGGATGATTG GAATAAGAGA TTTTCAATGC TTTTGAAAGA 
    TTCTTTAAAG CAAGAAGTTA TTTCCAGGGA GAAAAAAGAT AGACGGGATT 
    TTGATAAACT TGCTGCTCTG GCTACAACCC TGGGATTGTA TAGGTACATC 
    AATCATGCTG CTCCTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94784 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: -124; Region: promoter
    Flanking Genome Sequence: GT14221 - 5-prime edge 
    TCCTACTTTC TCCCTGGAAC TTGCAACTAT GCCAATTTTA CCTAATCGCC 
    CTCCAAAAAT TTTGTAAACT TAAAAGAAGA ATTACACAAT TTGGTTTTGC 
    AGTCAAACAG TAATCAGTCT TTATGAGAGG AAATATAGAT TTAAGAGGAT 
    GTTTTCACGT TGCTCACATA CATATATGAT ATGATCGTGA CTCGTGACTG 
    TCTTTCTTTC TCAGAGACAA AACAAAAAAG GGAAAAAAAA ACCAAAGGAC 
    ACCATGGGCC CTAAACCTTA ATAACAATCT CGGAAATAAA AAAATCAGAG 
    GGGGAACCCT TGGAAAAAAT TTCTT

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR