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GT14231

CSHL Arabidopsis genetrap mutant lines

Original: GT14231

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14231

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14231 - 3-prime edge
    GAGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAA GTACAACTTC 
    AAGTCTTCAT CTCACTCGAC
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 819111 [Map]; Strand: w
      • AT3G03440.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 277; Region: intergenic
      • AT3G03450.1 - [+] show detail - RGA-like 2
        Distance: 226; Region: intergenic
    Flanking Genome Sequence: GT14231 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAAGTA CAACTTCAAG 
    TCTTCATCTC ACTCGACCAA NNGACGTACC TTATCAACTT TTAAAAATAT
    GCGAGGTGAA ATTATTCTAC TTTTATGAGA TCATAAGCCT CAAATTCAAT
    GGGCTTCTAC CTAAGAGTTG GTGGATCTAA ATTTTGGGGG GTTTCAGTTT
    TGAAAACATA TATGAAGTTA TTCTTTCTGG AATTCAATCT AGACGTATAG
    TCCAGAAGGA AATTATAAAA CGACATTAAC GTAGGGATTT TGGTCGGATA
    GGTTCGGATT ATATATAGAA CACTCCAATG GCACAATAAT ATCCTTGAAA
    CCTTTTTTTA

AT3G03440.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G12710.1); Has 4476 Blast hits to 2974 proteins in 239 species: Archae - 0; Bacteria - 8; Metazoa - 931; Fungi - 611; Plants - 2534; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03450.1

Model type
Protein coding
Short Description
RGA-like 2
Curator Summary
Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.
Computational Description
RGA-like 2 (RGL2); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA-like protein 3 (TAIR:AT5G17490.1); Has 2697 Blast hits to 2637 proteins in 314 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2690; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR