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GT14235

CSHL Arabidopsis genetrap mutant lines

Original: GT14235

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14235

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23496164 [Map]; Strand: w
      • AT5G58050.1 - [+] show detail - SHV3-like 4
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT14235 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAC 
    TACAGCTATG ATCCCTCTGC TGAGTATCTC CAGTTTGTGG ACAATGGCCA 
    GTTCTCTGTT GATGGTGTCA TCACCGATTT CCCGCCAACA GCATCACAAT 
    CAATCAGTGA GATGACTTGC TATATATGTT TCCTCAGATA GCTGATTATT 
    AAGAAGAAGC TAAAGCGTCT GTTTTCTTGC AGCTTGCTTT TCTCACCAAA 
    ACGGCAATCT CCCCAAAGCA GGGCATGCAT TGGTTATAAC TCACAATGGA 
    GCAAGCGGAG ACTATCCAGG CTGCACTGAT CTGGCTTACC AGAAAGCAAT 
    CGACGATGGA GCAGACATAA TTGACTGCTC TGTTCAGATG TCCAAAGACG 
    GAATCGCTTT CTGCCATGAT GCTGCAGACC TCTCAGCAAG TACCACCGCC 
    AGGACTACTT

AT5G58050.1

Model type
Protein coding
Short Description
SHV3-like 4
Computational Description
SHV3-like 4 (SVL4); FUNCTIONS IN: glycerophosphodiester phosphodiesterase activity, kinase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 5 (TAIR:AT5G58170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR