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GT14245

CSHL Arabidopsis genetrap mutant lines

Original: GT14245

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14245

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18527157 [Map]; Strand: w
      • AT4G39950.1 - [+] show detail - cytochrome P450, family 79, subfamily B, polypeptide 2
        Distance: 0; Region: exon2 (CDS)
      • AT4G39952.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -523; Region: promoter
    Flanking Genome Sequence: GT14245 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TCCAAGTGAA ACCTTGAAGA AGTCTCGCGA GCATCATCGT GGTCAACGCC 
    GTTCCTAGCG CCGGAGCCGC ACAACCTCTT TTCCCGGTAC TGAACGAGAT 
    AAACCGGAGA TCGTTCTCGG TCAAAGTAAC TTCGGAGCAT TCGTTGAGAT 
    GTCTCTCCGG TTTAAAGCAG AGTGGGTCGG CCCAAACTTT AGGGTTACGG 
    CCCAGCCCAT ATCGGCTAAG AAGGACTTGA CTTCCTTTAG GGATGTGATA 
    TCCGGCGACG GTTGTGTCAG AAAGTGCCAC GTGGGGGAGG TTGAAGGCGG 
    CGACGGGATG GAGACGGAAA GCTTCGCGGA GGATAGCTTT GACGTAGTTT 
    AGTTTTGGGA TGTCGGATTC TTGAACGAGT CTCTCTTTCC CGACGACTCT 
    GTCGATCTCT TCCATTGCTT TACGGAGAAT CTCCGGTTTG TTCACCATCT 
    CCGCCATGGC CCATTCCACG GCGTTTGATG GATTGTCTGG CGCCGCCATT 
    ACAAGCTCCT ATTCATCATA AACATATATA CCAGCTTTTA TTAGTTTTGG 
    ATCTTTCATT TTTATGTTTT TGCATGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18527209 [Map]; Strand: w
      • AT4G39950.1 - [+] show detail - cytochrome P450, family 79, subfamily B, polypeptide 2
        Distance: 0; Region: exon2 (CDS)
      • AT4G39952.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -471; Region: promoter
    Flanking Genome Sequence: GT14245 - 5-prime edge 
    TCCTACTTTC TCCCTACTTG GAAGCTACCT GAGAATGAGA CACGTGTCGA 
    GCTGATGGAG TCTAGTCACG ATATGTTTCT GGCTAAACCG TTGGTTATGG 
    TCGGTGAGCT TAGATTGCCG GAGCATCTCT ACCCGACGGT GAAGTGAGAT 
    GAGACGACGC CGTATATATT TTATGAAACT ACTTTTATAT AATCGCCCAA 
    CCAAGTTTGG TCAATTCCGG TTACCAGAAG ATAATTGGTC AAATTGTGAA 
    CAAACTTGTG TGTTGGTCTT GGTTCTTTTT GGGACACTTG AATTGTGTCT 
    CCTTTTACCT CTTCTTTTGT TGGTTTCAAT AAAAACTTTT ATTACCATTT 
    CAATAAAAAG ATTATCAAAT TAACAAATCT GCCTGTAATA TATATATTTG 
    GTCAATTTAA ATCTATACTA TTAATTGAAA ATCTATGACA TTTGTTTTTA 
    CTGTTAATAT AAAGCTCTGT TTCGGTTTTC TTGTGACCAA CAAACATAAA 
    ATGGTTTGTT ATTTAATTAC AAAAAGGCCC ATTAGAGAAA TATTGCAATG 
    TTGCGTCGTC TCTTGAAACC CAATCTTGTT GTTACTCTAC GCAAACTCTC 
    TTCTTCTTCT GCAAGCTACG TCGATCGTCA TAGTAGTGTG ATTCTCTGCG 
    ATCAGAGCTT GAGCTTAGAG TCTCTGCGTA AACACAACGC TCTTATCATC 
    ACCGGAGGAC TCTCGGAAAA CATCTTCGTC GCATCGAAGC TAATTTCATC 
    TTACG

AT4G39950.1

Model type
Protein coding
Short Description
cytochrome P450, family 79, subfamily B, polypeptide 2
Curator Summary
Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.
Computational Description
"cytochrome P450, family 79, subfamily B, polypeptide 2" (CYP79B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily B, polypeptide 3 (TAIR:AT2G22330.1); Has 28507 Blast hits to 28366 proteins in 1550 species: Archae - 44; Bacteria - 2565; Metazoa - 10705; Fungi - 5395; Plants - 8898; Viruses - 0; Other Eukaryotes - 900 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39952.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G03580.1); Has 47712 Blast hits to 13890 proteins in 262 species: Archae - 2; Bacteria - 17; Metazoa - 157; Fungi - 156; Plants - 46708; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink).
Link
InterPro Scan - TAIR