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GT14256

CSHL Arabidopsis genetrap mutant lines

Original: GT14256

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14256

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 809103 [Map]; Strand: w
      • AT3G03400.1 - [+] show detail - EF hand calcium-binding protein family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14256 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTCACA CTAGCAAAGA 
    TGGTAAGATC TCTTGGGAAG AGTTTCGTGA CGCGATTCAT GCTCTCTCTC 
    CATCTATCCC TTCAGAAAAA CTCGCCAAGA TGTTCCTCCA ACTTGGCCCC 
    TATGGAGACG GGCATGGCAA TACTATCAAA TTCGCTTCTA GCATGGACCA 
    AACAGGTCCC TCAACTGGAG GTGACGTTCA CCACTATCTC AAGGATGCTG 
    TTCAACTATT CGATATTGAT TGAGATGGGA AGATGTCTGT CAATGATCCC 
    CTTCGTGTCG CTCACTCAGC TTGGAGAGAA GTGTACGGTC GAGAGCTGCG 
    TAGGGATGGT TCAAGCTATC GATGTAGATG GTGATGGTTA TATTAGATTC 
    GTAGGAGTTT AAGACTATGA TGATGCGTTC TAGGAAATAG TGTAGACTAT 
    ATATTCCTCC TAAGGACCCA AGCCTAGAAT TTGATCACTA CAAATCTATA 
    ATGTTATAGT CTCTGTTCAT CAATTTGAGT TTCGAATTGA AGCTTTTTCA 
    AGTTTGCTAA GATTTATGAC ATCATCAATT GGTTTTGATC GCAGCTTGAG 
    GGATCAAAAT CAAAAGTAAA TTAAAAAGTA TAAGTAGAAG AAAATATTAA 
    CATGGGAAAT CTTTTGATTT GGACATTTTT ACTGGATGTA AAATCCTTCA 
    GTTTTTCTGT AAACTGTAGT GACAGGTCTT TTAGTATGAT GGATTAATGA 
    AGAATTTGAG TA

AT3G03400.1

Model type
Protein coding
Short Description
EF hand calcium-binding protein family
Computational Description
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 13690 Blast hits to 10114 proteins in 1236 species: Archae - 0; Bacteria - 48; Metazoa - 5217; Fungi - 2887; Plants - 3646; Viruses - 0; Other Eukaryotes - 1892 (source: NCBI BLink).
Link
InterPro Scan - TAIR