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GT14281

CSHL Arabidopsis genetrap mutant lines

Original: GT14281

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14281

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2039827 [Map]; Strand: w
      • AT1G06660.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron1 (CDS)
      • AT1G06670.1 - [+] show detail - nuclear DEIH-boxhelicase
        Distance: -606; Region: promoter
    Flanking Genome Sequence: GT14281 - 5-prime edge 
    TCCTACTTTC TCCCTGGCCA GAGCGATACG ATCTTGATCA AAAATCAAAA 
    GAATCGATCA GAAGCCAACA GACTAAAATC CATCATATAC AAAATTCAGC 
    TCAAGGATCA AACAGGGCAT TGCGAATTGC GATCTATTTC TTATACGATC 
    ATTGTAGCAG CAAAATTGAC AGGATCATGC AAAGAAAAGA AGCGGAAAAA 
    GCAAGAGAAG CTAAAGAATT ACTCTGGAAT TGGCGAGTGA AGAGTGAGAG 
    ACGAGATTAC TAGTAGAGCG ATTGTCTCTG GCGCGGAAGC AGTCGAGAAA 
    ACAAGCCATG GCTCTACAGA CTGATAAATC GATGAATCTG AGCACGGATC 
    TGCACAAGGG GCTTAGGTTT CGGTTCATCT CACTCGACC

AT1G06660.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06670.1

Model type
Protein coding
Short Description
nuclear DEIH-boxhelicase
Curator Summary
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins
Computational Description
nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink).
Link
InterPro Scan - TAIR