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GT14286

CSHL Arabidopsis genetrap mutant lines

Original: GT14286

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14286

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2925526 [Map]; Strand: w
      • AT3G09520.1 - [+] show detail - exocyst subunit exo70 family protein H4
        Distance: 0; Region: exon1 (CDS)
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: -776; Region: promoter
    Flanking Genome Sequence: GT14286 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TATCTTCAGG GGTAAATCGG ACAACTGAGT TCATGTTTCT CGCGCCATCG 
    CCTTCTCCCA AGATAACAGA ACCTCTCGTG TTGTAAAACT CGCGATAGAT 
    GGGCACCAGC TTTCTCGATA TCGAGGCTTT GATCTCGTCT CGTATATGTG 
    GATCCGCTGC GACGCAGACG CTGTGCTTAC TATACGCGTT TTCGAAGCTC 
    TCGCTGAATT TTTCAAACCG CTCCTTCGTG TCACTCGACG AAAGGTTTGA 
    CAATTCCTCC GAGGGAGATG AATCAAGAAG ATATGAACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12712315 [Map]; Strand: w
      • AT2G29760.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -569; Region: promoter
    Flanking Genome Sequence: GT14286 - 5-prime edge 
    TTTCCATCCT ACTTTCTCCC TGGCTTCCAT CTTGTATATC TTCACCTATT 
    TTAAGGATCA AAAATAAAAA CAGAAAGGTA TCCAGCAATT AAAAGTGTCA 
    CATACTAAAA TTTAATTAGG TATAAGAGAT ATGATAAGTA AAACACGATA 
    ATAAAGATTC TAAACACCTA TAAATATACG ATCGAAATAT ATTAGTCTTT 
    GTGGTTACCA AGGTTGATGG ATCCCCCAAG TTGACCAAAT GCAATATAAT 
    GAAAATTCAC AACAAAAATC GAATAATTGA TACATAATAT GATTGCGACA 
    CAACACCAAC TCGTTGATTC TAATTATGAA GAGATGTGAT GCAATTATAT 
    ATGTTTTCCT ACTTTTAAAA GATTTGATTG AAAGCAAAAG GATATGTATA 
    ACAATGTGTC TACCGTTGAA TTAACACTAC AAATGAAACA AAGTTTGCCT 
    CTAAATCATT CTAGCAAAAT TATGAGTTAG TGAATTCTAT TTATTTTGAA 
    ATTTAGATGA ATTTTAATGA GAACTTTTTT TTTTGGTTAA GGGAAATTTT 
    GCC

AT2G29760.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 81 (OTP81); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 39055 Blast hits to 14294 proteins in 286 species: Archae - 1; Bacteria - 14; Metazoa - 160; Fungi - 158; Plants - 37962; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09520.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H4
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H4 (EXO70H4); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: stem, sperm cell, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H3 (TAIR:AT3G09530.1); Has 837 Blast hits to 827 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 71; Plants - 622; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09530.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H3
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H3 (EXO70H3); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H4 (TAIR:AT3G09520.1); Has 786 Blast hits to 774 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 29; Plants - 616; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR