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GT14288

CSHL Arabidopsis genetrap mutant lines

Original: GT14288

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14288

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7369124 [Map]; Strand: w
      • AT4G12430.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -394; Region: promoter
      • AT4G12432.1 - [+] show detail - conserved peptide upstream open reading frame 26
        Distance: -394; Region: promoter
    Flanking Genome Sequence: GT14288 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACAC 
    AGAATGCAAA ACGTTTGTGA ATTTATATAT TCTGGCATAA CGAATAACTT 
    AATTAATCTC ATCTCTTATA AAATATTTCT TGTATACAAC AAAAAGATCT 
    TTATAATAAA AATCTTTGAC CGACCTTACT AAAAGTGAAA TAAACAAACC 
    GCCATAATTT GTAATCGAAC CAAAAATCGT TTTCGAAATC TCTGAAAATC 
    GCGTATGACT AAATGACAAA CTCATAACGT GTTATTGATT GGTCGATCAT 
    TTTAAAATGA TGGTAAATTT TGGTAAATAA ACCCAACATG GATGGTTCTT 
    CTAAACCACG TCTCTGTCTC TAATTTATCT CAAAGTCTCT AAAAGAAAGA 
    GAGAGTCTAT AAATACGAAA AACCCTCCGC AATTTTCTTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7266935 [Map]; Strand: c
      • AT4G12140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14288 - 5-prime edge 
    ACTTTCTCCC TGCTCCCTAG TTGTAGTCAC CACCACATCC AATCGTTACT 
    CCACGATCAA CTCCATAGCG ACGACAATTG GTTGTGCGAT CACTTAGTCC 
    CAAAGATCTC AACGGCTGCA ATCAACGCAG GTTTTATGAA CAACGGCGTT 
    GAATTGACCG TTGGCGTCAC AGTTACTTAC CAGTATGTCC ATGTCGAGGA 
    GACATCATCA AAGGAATCGA GGATGGTTCG ACTAGGGAGC ATGAAAGCAG 
    AGGAATTGAA GAGTTTTAAC ATGGAAACAG AGTCGTGTTC CATCTGTCTA 
    CAGAGTCGTG TTCCATCTGT CTACAGAGTC TAGTCTCCAG TTCGAAAACA 
    GAACCCACTC GCATGAGTTG TTCCCATGTC TTCCATAGTA GCTGTCTCGT 
    GGAGTGGCTC AAGAGAAAAA ACACTTGCCC GATGTGTCGG ACTGTGCTCT 
    ACGATCGATG ATGATGATTG GAACAGAGGA TTGAAACTAG GGTGTCATCT 
    AGCTACTCTA TTGCATTTAA TGAAAAGTTT ATGTAATTTA GTTATCAAGG 
    TTTCAAATTC TATATCAATA AGAAGTTTTG TAATAGCATC ATTACTTCTA 
    ATAACATATC AACAAGAGGT TTTGTAATAG CATCATTACT TCTAATAACA 
    TTAACTCTAA ACTTTGCTGT TTTTTAAGTC ACATGCAACT TGTAGACTCA 
    TCAATGTTTT CCCTCACAGA CTACACAGAC TCATCAATGA TCTAAC

AT4G12140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G12150.1); Has 7725 Blast hits to 7711 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 663; Plants - 3301; Viruses - 68; Other Eukaryotes - 1352 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12430.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G22590.1); Has 2381 Blast hits to 2375 proteins in 851 species: Archae - 41; Bacteria - 1352; Metazoa - 219; Fungi - 150; Plants - 494; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12432.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 26
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF26 represents a conserved upstream opening reading frame relative to major ORF AT4G12430.1
Computational Description
conserved peptide upstream open reading frame 26 (CPuORF26); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR