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GT14306

CSHL Arabidopsis genetrap mutant lines

Original: GT14306

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14306

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 655255 [Map]; Strand: w
      • AT3G02920.2 - [+] show detail - Replication protein A, subunit RPA32
        Distance: -905; Region: promoter
      • AT3G02920.1 - [+] show detail - Replication protein A, subunit RPA32
        Distance: -905; Region: promoter
      • AT3G02930.2 - [+] show detail - Plant protein of unknown function (DUF827)
        Distance: 0; Region: intron1 (CDS)
      • AT3G02930.1 - [+] show detail - Plant protein of unknown function (DUF827)
        Distance: -51; Region: promoter
    Flanking Genome Sequence: GT14306 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAATTAC 
    GTTAGAGGAG GCGACAAAGG AAAAATTGAG ACTTGATATA CATTATTAAA 
    TTATGGAACC TGGAAACTCA AATTTGCTCG AACTCTAACT GGGTTCCCAT 
    TTTTAGCGTA GAGATCAAGA TCAAGAGAGA GAGAGAGACA ATGATTCG

AT3G02920.1

Model type
Protein coding
Short Description
Replication protein A, subunit RPA32
Computational Description
RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2); Has 524 Blast hits to 524 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 241; Fungi - 124; Plants - 108; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02920.2

Model type
Protein coding
Short Description
Replication protein A, subunit RPA32
Computational Description
RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication protein A, C-terminal (InterPro:IPR014892); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2).
Link
InterPro Scan - TAIR

AT3G02930.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF827)
Computational Description
Plant protein of unknown function (DUF827); LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1); Has 245110 Blast hits to 119184 proteins in 3857 species: Archae - 3264; Bacteria - 55991; Metazoa - 95493; Fungi - 19215; Plants - 14009; Viruses - 1145; Other Eukaryotes - 55993 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02930.2

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF827)
Computational Description
Plant protein of unknown function (DUF827); LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1).
Link
InterPro Scan - TAIR