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GT14315

CSHL Arabidopsis genetrap mutant lines

Original: GT14315

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14315

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5945191 [Map]; Strand: c
      • AT5G17930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: -761; Region: promoter
      • AT5G17950.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -232; Region: promoter
    Flanking Genome Sequence: GT14315 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAGTGACAAG GTTTAATCTT GTAATCTAAT TTAACATTAT TTTCAAAAAA 
    AAAAAAAAAA AAAAATTTAT TTTGGGAAAA AAAAGGTTTT TTTTTATAAA 
    AAAAAATTTT AAAACCCCCC GTTTTCCGGG GGGGGGAAAA AAAGGGCCTT 
    AAGGGTTTTC CCGCCGGAAC CACCCAAATG GAGCCTTCCC CCAAAAAAAC 
    CTTTTTTTGG GCGTTTGGGT TTCAAAGGTT TTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5945109 [Map]; Strand: c
      • AT5G17930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: -679; Region: promoter
      • AT5G17950.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -150; Region: promoter
    Flanking Genome Sequence: GT14315 - 5-prime edge 
    CTAATTACAG GAGTAACAGG ATCGACAAGA TATACAAAGT GGCTTACCCA 
    TCAAGCGAAG AGGCTCAACA AATCTTCTCA TACTCTGCGT TTGGGAAAAG 
    CTCTCCACCA AGAGGTTACG TGAAGCATGC CACTGAAGTA GCTAAGCTTG 
    TTGCTCCTTT TCCACTTGGT CTCAAGGTTT TAGGTTCGGC TTTACGTGGG 
    AAGAGCAAAG AGGAGTGGTT AATGACACCA GCTAAACTCG AAACCTATAT 
    TGACTACAAA GAAATTTATA AAGCAATTAG ATTTGCATAT GATGGTTTAT 
    CTGAGAAACA CAAAACTTCA TTTAATCTCT CTGAACAGAA AATATAAGCT 
    TTGGTGTGAA CGTGAAAGAC ACAATATTCT CGCTTTCGGA GAAGGGCTGG 
    GACGTGGAGA AAGGGATACA AACCCTAGCT GATATGGGTC TCATCTCTAT 
    ATCTAGGGAA AGAGGAATCA TCATGCAACG TTTGGTACGC TTAATGTCTA 
    CAAACCCTAG CTGTTCTATT

AT5G17930.1

Model type
Protein coding
Short Description
MIF4G domain-containing protein / MA3 domain-containing protein
Computational Description
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15897 Blast hits to 11268 proteins in 674 species: Archae - 101; Bacteria - 729; Metazoa - 6896; Fungi - 1567; Plants - 651; Viruses - 76; Other Eukaryotes - 5877 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17950.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR