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GT14326

CSHL Arabidopsis genetrap mutant lines

Original: GT14326

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14326

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 916430 [Map]; Strand: c
      • AT3G03702.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT3G03700.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: -5; Region: promoter
    Flanking Genome Sequence: GT14326 - 3-prime edge 
    ACCGACCGTT ACCGACCGTT TTCATCAATA TACATATATA TATACAACAG 
    AAGAATGATG ATTGATGAAG ATGGTTAAGT GGAACTTGGG ATTCAAGGAA 
    CACTCCTGGC AAATACAACG CATCTATGCC TACACCAACA AGCAACGGTC 
    ATGCCTCTCG CGTGCAGATT CAAGAACCAA GAATAATGTC TCCTCTTCCT 
    CCTTCTTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 834684 [Map]; Strand: w
      • AT3G03500.1 - [+] show detail - TatD related DNase
        Distance: 334; Region: intergenic
      • AT3G03510.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: -1355; Region: intergenic
    Flanking Genome Sequence: GT14326 - 5-prime edge 
    TAACAGTAGC CCCTTACAAA AGTTTTGCGT ACTTGGGTAA TTTACATTAA 
    AAAAAACACA GATTACCAGA AGAACAGAAC TAAACACTAA CACTCTACAA 
    TCTTCTTCTT CATTCTTGAG AAATCATAAG TCTCTATTCA CCTT

AT3G03500.1

Model type
Protein coding
Short Description
TatD related DNase
Computational Description
TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT5G17570.1); Has 10176 Blast hits to 10176 proteins in 2674 species: Archae - 185; Bacteria - 6995; Metazoa - 308; Fungi - 266; Plants - 100; Viruses - 0; Other Eukaryotes - 2322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03510.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G17580.1); Has 834 Blast hits to 794 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03700.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1); Has 327 Blast hits to 327 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 118; Plants - 134; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03702.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G03700
Link
InterPro Scan - TAIR