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GT14331

CSHL Arabidopsis genetrap mutant lines

Original: GT14331

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14331

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 270821 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT14331 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTCTT 
    GGCAAGTGCG GCTTCCTCCA TTAAACTGAG AGATCTTGCT TTCTCTTTCA 
    TCTCACTCGA CAAGTGAAGA GTGTCTTTCT CCAAGCTAAC AATTTGCTCT 
    TTGATCTGCC ATCCTGGTAG TTCTTTCACA GGATCTAACT TGTGAGTCTC 
    CATACACTGC ATAACTGATG ATAACACACC TAGCTGCTTT GTAGCCGCTT 
    CTTTCTGTTG AGAAATAAAT ATATCAATGG TCAGACTCAG ATGATGATAA 
    AGAGTTCATA AAGGAACATA ATGTGCAAGG GAAGGGTTCA TACAAATGCC 
    AGCGGTGACT GGGCTTTCCG TTTTGCACCT CTCAAATGAC TCCTTGCTCA 
    TATTTAAGAA TGAAGCTAGA ACTAAGAGCA GCTGAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 270881 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT14331 - 5-prime edge 
    CTTTCTCCCT GGCCAAGAGA AGTATAACCA ACAGATAAAA CGTCCAAGGT 
    TGTCACCCAT GGAAATGCCA CCAGTAACTT CTTCATCATA TTCTCCTATC 
    TACCGTGATA GAAGCTTTCC TAGTCAAAGA GACGATGACC AAGATGAAAT 
    ATCAGCTCTT GTGAGTAGTT ACCTCGGCCC GTCAACATCT TTTCCTCATC 
    GCTCAAGAAG ATCCCCGGAA TATATGGTTC CACTTCCACA TGGTGGGTTA 
    GGAAGAAGTG TATATGCATA TGAACATCTG GCCCCAAATT CATACTCTCC 
    AGGTCACGGA CATAGACTTC ATCGACAGTA CTCTCCGTCT TTGGTTCACG 
    GACAGAGACA TCCACTACAG TACTCTCCTC CAATTCATGG ACAACAACAG 
    TTACCATATG GTATACAAAG GGTTTACAGA CATTCACCAT CTGAAGAAAG 
    ATATTTGGGT TTATCCAATC AAAGGTCTCC TCGCAGTAAC TCATCATTAG 
    ACCCCAAATA GGAGGAATGT AAATTTGTAA CAAAGCTTTT TGTTTTTGCT 
    TAAGTTAGTC ATTTATTTAA CTCCCAACAG TCTCAAAATT TAATTTAATG 
    TTTGGGGCTT AAGAATGCAA ATTTTTTTGC TCCTGGAATT GACATTTA

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR