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GT14333

CSHL Arabidopsis genetrap mutant lines

Original: GT14333

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14333

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 812677 [Map]; Strand: w
      • AT3G03410.1 - [+] show detail - EF hand calcium-binding protein family
        Distance: -958; Region: promoter
      • AT3G03420.1 - [+] show detail - Ku70-binding family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14333 - 5-prime edge 
    CTTTCTCCCT GCGTAGGAGT TTCCGAAGTA TATATACAGA CTAAGCATCT 
    AGATTTCAAT CTTCGTTCAT CTCACTCGAC CAANGAATCT TANTCCATTT 
    GTTGTTTGAT TAGCTCACTC TGTAATTTGA GATATTCATG GAAAAAGTTT 
    TAATTATTTC GTGTAATCTA GGGTTTAGGG TTTTGGAATC ACTTGAGGGT 
    TTAAGGAGTT TAGGATGTTA AATCACTTGT TTGATTTGCT TTGGTTATAT 
    TGGTCTGACT TTGAATGTTG TTTGATTAGA CCCAATAGTG AAGTTTCTGA 
    TGGAGCAAAT GGAGAAATCT GGGTGTAGAG TTGGTGATAA TTTCGTTAAG 
    GCTGTTGTTT GTACTGGACC TGTAGCTGGA GGTTACACTA AAGGAAGAGG 
    GGTAAAACCA TTTCCATGTT TCCTTTTTTC GAGCTCTTTG ATGATTGTCC 
    CTTGATGCTG AAATCTTGCT TTGTTTCCTT TTGTTTTCTA TGTTTCAAGA 
    TAACTGTCTG CAGTAACTAT CTGACCATTC AAGATGAAGT GAACCAAGTA 
    GTTATACATG AGTTGATTCA TGCTTATGAC

AT3G03410.1

Model type
Protein coding
Short Description
EF hand calcium-binding protein family
Computational Description
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 14553 Blast hits to 10409 proteins in 1208 species: Archae - 0; Bacteria - 112; Metazoa - 5551; Fungi - 2786; Plants - 4039; Viruses - 0; Other Eukaryotes - 2065 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03420.1

Model type
Protein coding
Short Description
Ku70-binding family protein
Computational Description
Ku70-binding family protein; CONTAINS InterPro DOMAIN/s: Peptidase M76, ATP23 (InterPro:IPR019165); Has 337 Blast hits to 337 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 144; Plants - 46; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR