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GT14335

CSHL Arabidopsis genetrap mutant lines

Original: GT14335

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14335

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 405442 [Map]; Strand: w
      • AT3G02180.1 - [+] show detail - SPIRAL1-like3
        Distance: 0; Region: exon3 (CDS)
      • AT3G02180.3 - [+] show detail - SPIRAL1-like3
        Distance: 0; Region: exon3 (3UTR)
      • AT3G02180.2 - [+] show detail - SPIRAL1-like3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT14335 - 5-prime edge
    TCCTACTTTC TCCCTGCTCC TGGTGGAGGT CTTCTCTTGA TTATCTGTTT 
    GGAGGACCAA GTCCTGCTGG ATCTGGAAAC AAATGAAGTT ACTTGTAGTT
    TTTTTCCCAC TATTCAGATT CGTGTAAATC ATCAAAAGTG TTGGCTTTTA
    TCCCTTAGTG AACCCTGTGT GATTCAATTG TGATGTTTGC CTTTTGTTCT
    CTTCTTTGTC TTGTTAAAAG GAATTTTCAG ACAATGTTCT CTTTAAGAGT
    TCCAAGAAAA TAAACTAAAG TACTGATCAA CCAAGAGATC TATATCAAAT
    GAAACAAACA ATGCCCACAA GATCTTGCGT TGAATCAGCC ATGTTCAAAG
    CTCTGATCAA TCGTAGGAGA AATGATTCGA ATTCAGCCAT ATACTTACGT
    TTTATCATAG AGTAGAAAGA AACAGAGTCA AATCAACGAC CAATTGTAGG
    AGAAAGGATT CAACTATTAT AATTCATAAT CATGCACTCT TCTTCAAGTT
    CTAAGATTTA AACATAGCTA TAAGCCACAA AATCCTTAAC AAAAAACTAA
    AACTTTTAGG GGTCAAAGAC CACAATTTCG ATACAAGAAA GCAATTAAGA
    AACTCGGACG AATCTGAGTC ACGGTGAGAG TGCTC

AT3G02180.1

Model type
Protein coding
Short Description
SPIRAL1-like3
Curator Summary
SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
Computational Description
SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 418 Blast hits to 329 proteins in 68 species: Archae - 2; Bacteria - 13; Metazoa - 50; Fungi - 15; Plants - 147; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02180.2

Model type
Protein coding
Short Description
SPIRAL1-like3
Curator Summary
SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
Computational Description
SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02180.3

Model type
Protein coding
Short Description
SPIRAL1-like3
Curator Summary
SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
Computational Description
SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR