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GT14342

CSHL Arabidopsis genetrap mutant lines

Original: GT14342

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14342

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29352560 [Map]; Strand: c
      • AT1G78060.1 - [+] show detail - Glycosyl hydrolase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14342 - 5-prime edge 
    CTTTCTCCCT GGTCAGAAGC TTTACACGGC GTAGCCTACG CCGGTCCAGG 
    AATCCGGTTT AACGGAACGG TTAAAGCTGC TACCAGCTTT CCTCAAGTCA 
    TCTTGACCGC TGCTTCATTC GACTCCTATG AATGGTTCCG CATTGCTCAA 
    GTTCGTTTCT ATCTTTCACT CTCACTCTGT TTTTTCTCGT GTTTGATTAA 
    TTTATTTAAT AATCTGTCTT AAACTGTCAC AAGTATTGTT CAAATTTCAA 
    TGCTTTTTTT TAACAAATGT CATGGTAGAG TTATTAAAAG TTGATAAAAT 
    TTATCTAATA TTTGCTAAAC TGTTAAACCT AGTTTATGGT ATTTTTTGGA 
    TTAATTGTGT TAATTTTGGA ACTAAACTTG TTTTGGTAGT AAAATAGGTA 
    GGATATACTC TTTTTTTATA TAAGGAATAT TAAATAAGAA TGTTTTTGCA 
    TTGAGATTTT CAGGTTATAG GAAAGGAAGC AAGAGGAGTG TACAACGCAG 
    GGCAAGCGAA TGGAATGACA TTTTGGGCAC CAAACATTAA CATATTTAGA 
    GATCCACGGT GGGGAAGAGG CCAAGAAACT CCCGGCGAGG ATCCGATGAT 
    GACCGGAACT TACGCGGTGG CTTACGTTAG AGGACTACAA GGTGACTCTT 
    TTGACGGTCG GAAAACACTC TCCAATCATC TCCAAGCCTC CGCTTGTTGT 
    AAGCATTTTA CAGCGTACGA TCTTGATCGT TGGAAGGGTA TTACTCGCTA 
    CGTCTTTA

AT1G78060.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family protein
Computational Description
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G10560.1); Has 9183 Blast hits to 7917 proteins in 1177 species: Archae - 63; Bacteria - 5533; Metazoa - 16; Fungi - 1604; Plants - 525; Viruses - 0; Other Eukaryotes - 1442 (source: NCBI BLink).
Link
InterPro Scan - TAIR