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GT14344

CSHL Arabidopsis genetrap mutant lines

Original: GT14344

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14344

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 351737 [Map]; Strand: c
      • AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -279; Region: promoter
      • AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -279; Region: promoter
      • AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -286; Region: promoter
      • AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -309; Region: promoter
    Flanking Genome Sequence: GT14344 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATCCAC 
    GAGCAAGGAA CATTACCCAT GTGACATGAT TCCTACATGA TCAGTCTTGT 
    CTTCTACGTT ATACACTACT ACTCTATATC CACCTAAATA TAAATTAAAT 
    GCTTCTGAAA TGGAATAATC TTAAACAGCA CGTAGTTTTC ATATCACCGA 
    AGAAAACGGC AGGGCTGGCA AAATCACGAA TTTTTTAAAC AGGTATAATA 
    AAGAACTAGA AAACACTAGG CCCAATAAAA ACAGTGGGCT TAAAAAGCGT 
    TTTGATTTAG GGTTAATGTG TGCGTAACAT GTGATCATAG CCCACGAGTG 
    GGTAAGGAGT GTCTTCATCT TCTTCTACCG GAGATCGAGA AATAGCCGAC 
    GAAGTTTTGT TTTTTGAGTA AAACAGTATT CGTCGGACAA CCGAAGCGAA 
    ATCCCTAATT TCCCACAACA CGAAATACCA ATTTCCCCAA TTCGAAAACA 
    AACACGGTCT GGTATGCCGA GAAAATTCTC CATTTCTACT TTTCTTATAC 
    ATTTGTTTTG GTTGTTTCAT ATAAATACTT CTCATCTTCT TCGATTTTGT 
    TACCCTCCCC CAAACAATAT AAAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 133065 [Map]; Strand: w
      • AT4G00310.1 - [+] show detail - Putative membrane lipoprotein
        Distance: -578; Region: promoter
      • AT4G00310.2 - [+] show detail - Putative membrane lipoprotein
        Distance: -582; Region: promoter
    Flanking Genome Sequence: GT14344 - 5-prime edge 
    TCCTACTTTC TCCCTGGTTG CCGCCGCATT CGATCGATCA CTAATCACAA 
    TTCTCCAGCT CAAGTGGGAC ATTCGTGTTC GCCCTCTCTC GCCTGTCACG 
    CGTGTCTCTC ACGCTCCACA TTTTTTTTAA TCCCGTTAAT CACACGATCT 
    TAAGGTGTCT GATTTCACTA AAAACATCGG AGGCAAAAAA TGAAAAATCC 
    CATGTGCATG CTCAGTCAAA CTCACCCCTC ACGTGACACA TTGCCTCTAT 
    CACGTGATAG ACGAGTACCA TTTCTAGATA CAACTAAGAT TCATATAGAT 
    CCTTTAGGAT TTATTTTTTT ACAGGGTTGT ATGTTTAAAT TGAACACATT 
    TATGCCGTTG ACAAAATTTA AAAGTAAATA TGAGGTTGAC TTTTGATTTA 
    TAACAGATTC GTAGTATAGA ATATTTACAA TTGATTGACC AACAAAAATG 
    AGCAAAGATG TTACCGTGGG GTCGATTCTT TACCTGGGGA ACTTAAATTT 
    GGTAAAAATT AGCGGCAGCT TTTCTTTTTT AATTTTGCCT ACTACTACAT 
    CAGAGGG

AT4G00310.1

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 49 Blast hits to 49 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00310.2

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00830.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00830.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00830.3

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link
InterPro Scan - TAIR

AT4G00830.4

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link
InterPro Scan - TAIR