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GT14345

CSHL Arabidopsis genetrap mutant lines

Original: GT14345

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14345

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 916418 [Map]; Strand: c
      • AT3G03702.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT3G03700.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: -17; Region: promoter
    Flanking Genome Sequence: GT14345 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATACATATA 
    TATATACAAC AGAAGAATGA TGATTGATGA AGATGGTTAA GTGGAACTTG 
    GGATTCAAGG AACACTCCTG GCAAATACAA CGCATCTATG CCTACACCAA 
    CAAGCAACGG TCATGCCTCT CGCGTGCAGA TTCAAGAACC AAGAATAATG 
    TCTCCTCTTC CTCCTTCATC ATCTCACTCG ACGACGTTTG TGACGAAACT 
    AATATTACAT GTCGTGGTTT CGAGCCAGGG GAATTACGGG CTTCGACCCA 
    GAATCTCCTG ATATTCAAAA AAAAAAAAAT TCAACCCGTA GAACCTTGGC 
    GGGGATTTTT CTTCCCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 204862 [Map]; Strand: w
      • AT2G01450.1 - [+] show detail - MAP kinase 17
        Distance: -2556; Region: intergenic
      • AT2G01460.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -1274; Region: intergenic
    Flanking Genome Sequence: GT14345 - 5-prime edge 
    GGGGGGGATT TCCATCCTAC TTTCTCCCTG CACCTATCTA AGTTTCATCC 
    CAATTCCAAA TTCAACTCGC AGACCTATGC CCTTACTCTA TGATTTCTCT 
    ATCATTTTTC GAAAATATGT TTTCCACTCG ACATCATTGT AAAGTTAGCT 
    AATGGGGCTT

AT2G01450.1

Model type
Protein coding
Short Description
MAP kinase 17
Curator Summary
member of MAP Kinase
Computational Description
MAP kinase 17 (MPK17); CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 9 (TAIR:AT3G18040.1); Has 113085 Blast hits to 112072 proteins in 3455 species: Archae - 88; Bacteria - 12258; Metazoa - 41885; Fungi - 11781; Plants - 27798; Viruses - 485; Other Eukaryotes - 18790 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01460.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, kinase activity, nucleotide binding, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), ATPase, AAA+ type, core (InterPro:IPR003593), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: Phosphoribulokinase / Uridine kinase family (TAIR:AT1G26190.1); Has 3953 Blast hits to 3156 proteins in 1342 species: Archae - 38; Bacteria - 3073; Metazoa - 244; Fungi - 122; Plants - 227; Viruses - 4; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03700.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1); Has 327 Blast hits to 327 proteins in 106 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 118; Plants - 134; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03702.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G03700
Link
InterPro Scan - TAIR