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GT14349

CSHL Arabidopsis genetrap mutant lines

Original: GT14349

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14349

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5526 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon15 (CDS)
    Flanking Genome Sequence: GT14349 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTT 
    TCACCTAAAC CAGCGTCTTC CAGAGTTTCT GCCACTGATT TTTCCTTCCG 
    CATTTGCTGG GCTGCCTGAG GTTCAGATTG AAGCAGTTAA TTACTGTAAT 
    CAATATATCA AGAAAAGGAA ATTACTATTC TACCTCAAAT TTTGCTTTAT 
    ATGTAGTGAA AGATCTCAAC TGCTCTGGGC TCATTTCTGC CATAAGAAAT 
    TCAGGTTCAG CAGCCGTCTC TAACAGCTTA AAGATCTTGG CTCCTTCTTC 
    GCTGTCAGTG ACGTTCTGGC TGTGAACACC ATTAATTCCT CTCTGGTACT 
    CACACATAAT ACCCTCAACA AGAGCTGAGC GCCTACGGAA AATAGAAAGA 
    AAAAAAAAAG GCAAGTTTAA ATGAAAATAA ACCAGGACAA ACTGCAATCT 
    TTGGTTCTTT GGTGGGGAAA ACCATCCATA ATCAAAAGGC CAAAAGCTTT 
    TCTAAAAAAT ACAAAAATTG TCTGTCCCAA AAACAACTTA AAAACCAAAA 
    ATGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7431457 [Map]; Strand: c
      • AT4G12540.1 - [+] show detail - unknown protein; Has 29 Blast hits to 26 proteins in 11 species: Archae - 2; ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT14349 - 5-prime edge 
    TCCTACTTTC TCCCTGTTTG GAGATGGTTT TGTTCTCTGA GTGAGTGAGT 
    GATTATCTTG CAGTTAATCA AGTGTTACAT GCAGAAGAAG AAGAAGAATA 
    CAATGATTGT GAATTGGATC AACTCTTCCT TGTGCATTCT GATATTAGAT 
    CTGTTCATTC TCACTCGACT AGCTTCTCTT ACCTAGAGAT GTTTCCTTTT 
    TGAAACTTTA TCTGAGAGCT TGTGTGTTTT AACTTTAAGG AATCATATTT 
    TGGAATGTCA GATTGATGAG CTTGTTGTTG AAGCCACAAA GCGTAAGACC 
    GTGAGCAAGC ACGGGTTAAT AGAAGTTGAA TCTTTCAGAA CTGTGTTGTC 
    TGATATGCTT TCCTCACTAA AGGTTTCATT CCTTTTACAC CTATTGTGTG 
    CTTTGTTTCA TTTCCTTATA GTGTTTGACA ATTTTGCTTT AGATTTTTAA 
    ACCTGTTTTT ACGTATGCAG CCATGGTTTC CTCGATTGCA AGAAGCGATG 
    TCTGATTTTC AGTTGCTTCC AGAGGATCAG GAAGAACAGT CTTTGATGAG 
    CACAAACGAA GAAGAAGATT TGTTTGATGT TGAGAGTCCT GAGCGCTGAG 
    CCTACTCAAT TTGAGCCCTT AGTCTCTCCT TCTCCTCTTG TGCATTGGCG 
    TGGTGATCAT AACGCAGACA AGGGTAGACA ACTCTTTCTT TTGACACCAC 
    TACCCTTAGG AAAATCTGAA TTCCTAAAAC ACCAGAATGC ATCTAAGCTT 
    ACAGCTAAAA GGATTTTTCC AGACACTGTT GCAAATGAAC CGCTTGAAGC 
    TTCTAAAGAA AC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12540.1

Model type
Protein coding
Computational Description
unknown protein; Has 29 Blast hits to 26 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR