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GT14354

CSHL Arabidopsis genetrap mutant lines

Original: GT14354

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14354

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374593 [Map]; Strand: w
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT14354 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATGGGT 
    AATTATAATG TTGGCTACTC AATTTAAAAT CAAATTAAGT TGGTGAAACA 
    AAAAAAAAGT GGTTATGGGC CGAAATGATT ACCGGCCTTG ACTATGGGTC 
    CACTGGACGT AATTTTGATA TTAAGCATTG GGGGCTCTTA TCTCTTAGAT 
    GAGTCCCATA TGGGCCAGTT GTTGAGCATT AGCCATGGAA ATCAAAAAGT 
    TGCATGGAAA CAGAGACTTT AACAAAAAAA GGCTTCTTCC GGAGATCCTG 
    ACCCATAAAT CTGTATCTCT CTACCTTCGA CGAAGCCTAT GCTGTTGGAG 
    ATTCCTTCTT CGCTTGCACC CCTTCCTTCT TTGTTCCTTC CTCTGGCAAT 
    TCTTCTATTT GAGCCTTTGT TTCGGCTGTT TCTTCTTTCA CTCTGCTGCT 
    TTCGCTCTCT TCCTCTTTAA CTTCTGCTTC TTCCTGTTCC TCTTGTTTAC 
    TTTTTTCGAA ATTCACAGCT TCATTCATAT CTGTAGTAGT AGCAACTGTC 
    TCGCTATTTT CCTCATCATC AACTTTCTTG CTATCAAACT CCTCATAGAT 
    CTCAATCTTC TTGCTATCGA CCAACACTTC TCGTCTCTTC TGCCTAAACC 
    GCGGAACAAA TCACTCGTCT CATCCAAAAC CGAAACATAC TCAGGCTGGT 
    GGCTCTCAAA CTTATACTCC TCAATGATCT TCAACTCTTT TGCCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 429770 [Map]; Strand: w
      • AT2G01930.1 - [+] show detail - basic pentacysteine1
        Distance: -931; Region: promoter
    Flanking Genome Sequence: GT14354 - 5-prime edge 
    CTTTATCCCT GATTACACAC GTACACTTTG ACTAAAAAAA TTTTGTTGAC 
    CGAAGTTGTA TTTTATCTTA ATTCGATTTG AAAGATTGAG TACAATTATA 
    CACATTGTGT TTATTTTCTT GGCAACATTT TATAGAGTTT ATGGATGTAT 
    GCGAAACTTG AGAATGAAGG CATGAGACCA AAATATCCGA ATAAAATGAG 
    TAATGATGTA TTGAGAATGT TCTTCTCACA CAAATAACTA ATTGTATGTT 
    TATATATATG GCTTTTTATT ATTAAAAA

AT2G01930.1

Model type
Protein coding
Short Description
basic pentacysteine1
Curator Summary
BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.
Computational Description
basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 220 Blast hits to 218 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR