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GT14358

CSHL Arabidopsis genetrap mutant lines

Original: GT14358

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14358

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110542 [Map]; Strand: c
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14358 - 5-prime edge 
    CATCCTACTT TCTCCCTGCA CCCTCCATGA GTTACTATGC TTCTTTTGAT 
    TACAACACCA ACCTCCTCCT CCTTACCCTC CAGTGAGTTA CTATGCTTCG 
    TTTTCAAGTC ATTCAGATTT ATCATACTCA GGCAGGCTAG ATTCGTCTGG 
    TCATGGTTTT ACATCTACCG CATCGCCGCA TAGTCCCGGT ATGCACATTG 
    TGCCCTTTGG TAAAGCCTCC TTGAAGGTCC TCTTGTTGCA TGGTAATTTG 
    GATATTTGGG TTTCTTGTGC TAATAATCTA CCAAACTTAG ATTTGTTTCA 
    TAAGACATTG GGTGTTGTGT TTGGTGGCAT GACCAATATG ATCGAAGGCC 
    AGTTGAGCAA GAAGATCACT AGTGATCCTT ACGTGTTCAT CTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110540 [Map]; Strand: c
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14358 - 5-prime edge 
    TCCTACTTTC TCCCTGCACC CTCCATGAGT TACTATGCTT CTTTTGATTA 
    CCAACACCAA CCTCCTCCTC CTTACCCTCC AGTGAGTTAC TATGCTTCGT 
    TTTCAAGTCA TTCAGATTTA TCATACTCAG GCAGGCTAGA TTCGTCTGGT 
    CATGGTTTTA CATCTACCGC ATCGCCGCAT AGTCCCGGTA TGCACATTGT 
    GCCCTTTGGT AAAGCCTCCT TGAAGGTCCT CTTGTTGCAT GGTAATTTGG 
    ATATTTGGGT TTCTTGTGCT AATAATCTAC CAAACTTAGA TTTGTTTCAT 
    AAGACATTGG GTGTTGTGTT TGGTGGCATG ACCAATATGA TCGAAGGCCA 
    GTTGAGCAAG AAGATCACTA GTGATCCTTA CGTGT

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR