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GT14370

CSHL Arabidopsis genetrap mutant lines

Original: GT14370

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14370

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14300652 [Map]; Strand: c
      • AT4G29010.1 - [+] show detail - Enoyl-CoA hydratase/isomerase family
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT14370 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACACCA 
    AGGCATCAAT GAGACCCAGT TTGTGCCCCT CTTCTGAGGA TATTGACTTA
    GAAAGCTACC GAAATACCAG CATATAGTTT AATACAATTT TCAGCGAAGC
    AAATCATATT GACGCAAACT TGGTAATAAA ACTGTTGGTA ACTGCAGAAA
    ATGTCATCCT TACCAGTATC ATATCCGTTG CTTTTGCAAG GCCTACTAAC
    CTTGGAAGAC GTTGGGTTCC TTCATAGACA CAATTAGCTC AATTATATAC
    ATATCTATTA ATAAAGAAAA CCTAGCCAAA AAAAGTATCG CCTTCATCTC
    ACTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14300596 [Map]; Strand: c
      • AT4G29010.1 - [+] show detail - Enoyl-CoA hydratase/isomerase family
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT14370 - 5-prime edge
    CCTACTTTCT CCCTGCCTTG GTGCCACCTG GAGATGTGTT GAGCACATCC 
    AGAAAGTGGG CTCTAGACAT TGCAGAGGGA CGTAAACCCT TTCTGCAGTC
    ACTGCACAGA ACCGACAAAA TTGGTTCTTT ATCTGAAGCT CGTGCTATAT
    TGAAGAATTC AAGACAGCTA GCCAAGAAGA TTGCCCCAAA TATGCCTCAG
    CACCATGCTT GCATTGAGGT GATTGAAGAA GGAATCATCC ATGGAGGATA
    CAGTGGGGTT CTCAAGGTAT CTTTAGGATT TCGACGTTTA CCGTATTTCT
    TCCATAGCTT TGACATAGAT CATTTACTGC TCGTTGGTGC TCATTCGACT
    TTTTAAATTA GGGAATCATG AGTGCTTCAT CTCACTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14300598 [Map]; Strand: c
      • AT4G29010.1 - [+] show detail - Enoyl-CoA hydratase/isomerase family
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT14370 - 5-prime edge
    ATCCTACTTT ATCCCTGCCT TGGTGCCACC TGGAGATGTG TTGAGCACAT 
    CCAGAAAGTG GGCTCTAGAC ATTGCAGAGG GACGTAAACC CTTTCTGCAG

AT4G29010.1

Model type
Protein coding
Short Description
Enoyl-CoA hydratase/isomerase family
Curator Summary
Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities
Computational Description
ABNORMAL INFLORESCENCE MERISTEM (AIM1); FUNCTIONS IN: enoyl-CoA hydratase activity; INVOLVED IN: multicellular organismal development, flower development, fatty acid beta-oxidation, seed germination; LOCATED IN: cell wall, peroxisome, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), 3-hydroxyacyl-CoA dehydrogenase, conserved site (InterPro:IPR006180), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyacyl-CoA dehydrogenase, NAD binding (InterPro:IPR006176), Crotonase, core (InterPro:IPR001753), 3-hydroxyacyl-CoA dehydrogenase, C-terminal (InterPro:IPR006108); BEST Arabidopsis thaliana protein match is: multifunctional protein 2 (TAIR:AT3G06860.1); Has 47636 Blast hits to 46241 proteins in 2477 species: Archae - 813; Bacteria - 30277; Metazoa - 2018; Fungi - 1063; Plants - 649; Viruses - 0; Other Eukaryotes - 12816 (source: NCBI BLink).
Link
InterPro Scan - TAIR