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GT14378

CSHL Arabidopsis genetrap mutant lines

Original: GT14378

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14378

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30270915 [Map]; Strand: w
      • AT1G80500.1 - [+] show detail - SNARE-like superfamily protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT14378 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    CCCAATCGAT TCAATCACAA TTTACACTTG GTAAATTACA CAATAAAATT 
    GACAAAAATC GACAACAAGA CAACAAAAAA CAAATTCGTA AATTAAAGAA 
    TGATCACTGC GGGATGCAGA TTCAATTAAC GATCTAAGAA GCATGGAATA 
    AGAAATGGGG GTGAGAGAAA AATGCAATCT TACCAAAAAA AGAAGTAAAA 
    CCCTGTGAAT CTGATGTGCG TATCGTTTCT TCTTTACCAT CAACGCATCT 
    TATGTCTAGA CAAACATTGG AGAATCAGAT TCCTTGGGAT GTCTCTCGTG 
    TTTGGATCCG TGCTAAATAC TTCAAACAGG TTTGATTCTG TCGTGTACTA 
    GTTTAGGACT ATACACCACG AGAACTTTTT AGATACGGGT GAGAAGTTTG 
    GGTTTGTGAC CTGAATTTTG GAGGAAGAAA GGGGATCTGC GGTTTGATTC 
    AATATTGGGC TATTGGGTCT TTAACGGGCT TGTCATTTCG GTCCATTATA 
    TAATAGTGAA AGTGGCTAAA AGAATGTTGT TTTAGTCCCA ACGAGATGGG 
    AAGACGACTA GAAACCACCC CAACGAATTA CCAACAAGTT TGATATGTAG 
    TACATAGACT AATTTTTATG AAAAAAATAG TTTGGTCTAT GACAAA

AT1G80500.1

Model type
Protein coding
Short Description
SNARE-like superfamily protein
Computational Description
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G20930.1); Has 584 Blast hits to 580 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 112; Plants - 97; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Link
InterPro Scan - TAIR