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GT14380

CSHL Arabidopsis genetrap mutant lines

Original: GT14380

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14380

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68239 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2760; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1034; Region: intergenic
    Flanking Genome Sequence: GT14380 - 3-prime edge 
    CAACCCCACT CAATCGGATA GCTAGGAGAA AATTTACATT ATCATACAAC 
    CTTTATAAAA TGAAGAAGAT TTCAGCTAAT TTGTTCTCCT AAATCGGGGT 
    TCGTATGATG AACAGAATCG TGCTTTGCCA TAATTAGAGG AAGAAACAAA 
    AAAGTCAGCT AAATATATTA ATCTTGTCAA ACATTAATTT ATATTGAAGG 
    ATGACGTGTT AGAGTTTGTA TGCATATAAC CATATATAAA TGATTGCGTC 
    GTTCATTTTG TATAAAATTT TAGGATAATG ACTAGTTAGA TTAGACAAAA 
    ATTGATCAAT TATTATTAGG AGATCACATG GGACTGATAA GGATAAAGAA 
    AAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 60844 [Map]; Strand: c
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: -1558; Region: intergenic
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: -2566; Region: intergenic
    Flanking Genome Sequence: GT14380 - 5-prime edge 
    CCTACTTTCT CCCTAGTTAA CCACACATAT ATCTATAGTA TTCCAACATA 
    CCAAATATTA TATTAATATA TCATGAAACT TGAAAATGTG TTGGTGTATT 
    GGTCCGATTT TTAATTTGTC TTCAAGATCA ATTACCCACC TCTCTTTTTT 
    TTTTTTTTTT TTTTTTTTTT TTTTTGGGGG GGGGGGTTTT TTTTTTTTTT 
    TTAGGGGGGG TTTTTTGGGG GGAAGGGGGG GGGGGGTTTT TTTTTTTGGG 
    GGGGGGGGGG GGTTTTTTTT GGGGGGGGAA AAAGGGAAAA ACCCACTTTT 
    TTTTTTTTTT TTGGGGGGGG GTTTTTGGGG GAAAAAAAAA AAATTTTGGG 
    GGGGTTTTTT TTTTTTTTTT TTTTTAAAAA AGGGGGGGGG CAAAAAGGGG 
    GGGGGGGGGG GTTTTTCGGG GGGAAAAAAT TTTTTTTAAA AATTTTTTTT 
    TTTTTTAACC CCCCGGGGGT AAAAAAGGGG TGGGGGGGGG GGGGCCCCAA 
    AAAATTTTTT TTTTTTT

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR