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GT14383

CSHL Arabidopsis genetrap mutant lines

Original: GT14383

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14383

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3951458 [Map]; Strand: w
      • AT1G11720.1 - [+] show detail - starch synthase 3
        Distance: -95; Region: promoter
      • AT1G11720.2 - [+] show detail - starch synthase 3
        Distance: -95; Region: promoter
    Flanking Genome Sequence: GT14383 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTTG AAGCAGCCCC 
    CTGACTCCAC TGCCTCACCA CACCACACTT CTCAATCACC GAAGTCTGAA 
    ACTCATCTCA TTCATTATTT TATTCCAATT TATTCAGAGA ATACATGTGT 
    TGATTAATAT TATTATATTT ATCATAACAG TGGCTTTTAT TCATGAAATT 
    AAACCAATGG TGCTCTGATT TGTTGACATC TAGCAAAATA ACAACACCAG 
    ATTTTACAAT CGCAGTCTCT CACACGCAGC CATTTGTTTG TATAATGTGG 
    AAAATAATAT TCGTCTGCTT CTCAGATTAT ATTCCTTACG GTGTCTACCA 
    ACATTACATA ATCTGGACGG CTAATCTTAA ACAAATCACG TGGAAAGTAT 
    CGTAATAGCT CGTGACAACC AAATTGTTTG GCCGGTGCAT TAGCGCCACG 
    TGTCAGACAA TCCCCGCTTT ACAGGTCCAC GTCAAGCGAT CCTGTTTCCA 
    ACACTGACCG TTGATTACAA AGAATCGTCC AAGGGTCCAC GTGTACGAAC 
    AGGATACGAA TCTGATCCGT ACCGTACCTC CAAAACAAA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14383 - 5-prime edge 
    GTGGGATAGC TACCATTGCT ATCGACCTCC ACTATGTTGG ACATGTGGAA 
    AGTGTACCTG TGATCTGAGT TCTAAAAGCG AGAAGCAAAG GGAAGAAGAC 
    AAGGTACACG ACTTTCTAAT GGGTTTAGAT GAAGACACCT TTGGTATAGT 
    GAG

AT1G11720.1

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); FUNCTIONS IN: starch synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164; Bacteria - 3762; Metazoa - 19; Fungi - 103; Plants - 3720; Viruses - 1; Other Eukaryotes - 684 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11720.2

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1).
Link
InterPro Scan - TAIR