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GT14385

CSHL Arabidopsis genetrap mutant lines

Original: GT14385

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14385

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10983705 [Map]; Strand: c
      • AT1G30845.1 - [+] show detail - unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0...
        Distance: 3017; Region: intergenic
      • AT1G30850.1 - [+] show detail - root hair specific 4
        Distance: -1373; Region: intergenic
    Flanking Genome Sequence: GT14385 - 5-prime edge 
    ATTTTAGCTT TTACTCCCCA CTGAAGTACT TATCTGGAAT TTTCCCCTCT 
    TCAACATAGA GTTACATAAA ACAAAAATCG ACATTGTTTT GCATAAAATT 
    ATAGCCCATG AAAACAAACT AGACAAAGAC AAACCCATAA TAAAAAGAAA 
    TAAAACAACT TAACCTCGCC CGTGAACCGA CAAATCGGTT AGGATTTATA 
    TTTAAATCGC CTGGTTTAAT CGGTTGAGTT AATACAAATC CTACAATGTG 
    CCAATAAAAC AAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29868604 [Map]; Strand: w
      • AT1G79410.1 - [+] show detail - organic cation/carnitine transporter5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14385 - 5-prime edge 
    ATATAAATGT TCACTTTTAT GTCTCTAACC GCTAATGGAA CTCCATAATA 
    CGACATTCCC AACCCAAACA TTATGATCAT AACAAGTGTG ACTCTTCGGA 
    AAGCC

AT1G30845.1

Model type
Protein coding
Computational Description
unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30850.1

Model type
Protein coding
Short Description
root hair specific 4
Computational Description
root hair specific 4 (RSH4); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34910.1); Has 45 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79410.1

Model type
Protein coding
Short Description
organic cation/carnitine transporter5
Computational Description
organic cation/carnitine transporter5 (5-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 6 (TAIR:AT1G16370.1); Has 11548 Blast hits to 11506 proteins in 1434 species: Archae - 261; Bacteria - 5062; Metazoa - 3508; Fungi - 1334; Plants - 912; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).
Link
InterPro Scan - TAIR