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Mutant Lines
GT14386

GT14386

CSHL Arabidopsis genetrap mutant lines

Original: GT14386

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14386

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 940007 [Map]; Strand: c
  - AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
    Distance: -199; Region: promoter
  - AT3G03750.1 - [+] show detail - SET domain protein 20
    Distance: 0; Region: exon1 (CDS)
  - AT3G03750.2 - [+] show detail - SET domain protein 20
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT14386 - 3-prime edge
```
CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCACC 
GAAGACGCGT TGTCTTGGAG AAGCTTCCGA CATTATTCCG GCCGCCGATC 
GATTTCTCCG ATGTGCGAAT TTGATTCTCC CATGGCTAAA CCCTCGAGAA 
CTCGCCGTTG TTGCTCAAAC CTGCAAAACC TTATCCCTAA TCTCGAAATC 
TCTAACCATT CACCGATCTC TCGACGCTGC ACGATCCTTG GAAAACATCT 
CAATCCCGTT TCACAACTCC ATCGATTCTC AACGATACGC GTACTTCATC 
TACACACCTT TTCAGATCCC CGCTT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 940004 [Map]; Strand: c
- AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
  Distance: -196; Region: promoter
- AT3G03750.1 - [+] show detail - SET domain protein 20
  Distance: 0; Region: exon1 (CDS)
- AT3G03750.2 - [+] show detail - SET domain protein 20
  Distance: 0; Region: exon1 (CDS)

AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATCA 
TCCGAATACG CGCTGACTTG GAGAAGCTTC CGACATTATT TCGGTCGACG 
ATCGATTTCT CCGATGTGCG AATTTGATTC TCCCATGGCT AAACCCTCGA 
GAACTCGCCG TTGTTGCTCA AACCTGCAAA ACCTTATCCC TAATCTCGAA 
ATCTCTAACC ATTCACCGAT CTCTCGACGC TGCACGATCC TTGGAAAACA 
TCTCAATCCC GTTTCACAAC TCCATCGATT CTCAACGATA CGCGTACTTC 
ATCTACACAC CTTTTCAGAT CCCCGCTTCA TCTCACTCGA C

5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT14386 - 5-prime edge
```
CCATTGCAAA AGAGAGAGC
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 939923 [Map]; Strand: c
- AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
  Distance: -115; Region: promoter
- AT3G03750.1 - [+] show detail - SET domain protein 20
  Distance: -29; Region: promoter
- AT3G03750.2 - [+] show detail - SET domain protein 20
  Distance: -29; Region: promoter

ACTCTCGCAG TCGCTGCATA TTTTTTCTCA GCCAGCGATA TACAAACGAC 
GTCGTTGCGT TTAATTCTAT TTATATCCTT AAATTCTATT TTAAATTCAC 
TTCAGTAAGA ATTTTTTAAA GAAAAATGGC GAGTTTTTTT GTGTTAATCA 
TAACTATAGA TTTACTACCG TCGCTTTGGT CTGTGTAATG AAATCTGTCA 
TTTTCACAGA GGAAAAAAAC TTACAAAGAC AAAATCCATT GCAAAAGAGC 
GAGCAACAAC GACGAAATTT CGAAATGCCA TCGCCACCGA CGACGACTTC 
TCTCTCGGTG ACACAGACCA TAAACGGATC ACACAGCTTC ACAATCAAAG 
GCTATTCTTT GGCTAAAGGA ATCGGGATCC GGAAAACACA TCGCCAGCGA 
TACTTTCACC GTCGGGGGTT ATCAATGGGC TATCTAATTT CT

5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT14386 - 5-prime edge
```
CTCATGGCAT TTATAGATTT AAA
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 939926 [Map]; Strand: c
- AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
  Distance: -118; Region: promoter
- AT3G03750.1 - [+] show detail - SET domain protein 20
  Distance: -26; Region: promoter
- AT3G03750.2 - [+] show detail - SET domain protein 20
  Distance: -26; Region: promoter

GTGACTCTCG CAGTCGCTGC ATATTTTTTC TCAGCCAGCG ATATACAAAC 
GACGTCGTTG CGTTTAATTC TATTTATATC CTTAAATTCT ATTTTAATTT 
CACTTCAGTA AGAATTTTTT AAAGAAAAAT GGCGAGTTTT TTTGTGTTAA 
TCATAACTAT AGATTTACTA CCGTCGCTTT GGTCTGTGTA ATGAAATCTG 
TCATTTTCAC AGAGGAAAAA AACTTACAAA GACAAAATCC ATTGCAAAAG 
AGCGAGCAAC AACGACGAAA TTTCGAAATG CCATCGCCAC CGACGACTAC 
TTCTCTCTCG GAGACACAGA CCATAAACGG A

AT3G03740.1

Model type: Protein coding
Short Description: BTB-POZ and MATH domain 4
Computational Description: BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G03750.1

Model type: Protein coding
Short Description: SET domain protein 20
Computational Description: SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 3083 Blast hits to 3057 proteins in 283 species: Archae - 0; Bacteria - 58; Metazoa - 1675; Fungi - 416; Plants - 716; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G03750.2

Model type: Protein coding
Short Description: SET domain protein 20
Computational Description: SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (TAIR:AT2G23740.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR