1. Home
  2. Mutant Lines
  3. GT14386

GT14386

CSHL Arabidopsis genetrap mutant lines

Original: GT14386

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14386

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 940007 [Map]; Strand: c
      • AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
        Distance: -199; Region: promoter
      • AT3G03750.1 - [+] show detail - SET domain protein 20
        Distance: 0; Region: exon1 (CDS)
      • AT3G03750.2 - [+] show detail - SET domain protein 20
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14386 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCACC 
    GAAGACGCGT TGTCTTGGAG AAGCTTCCGA CATTATTCCG GCCGCCGATC
    GATTTCTCCG ATGTGCGAAT TTGATTCTCC CATGGCTAAA CCCTCGAGAA
    CTCGCCGTTG TTGCTCAAAC CTGCAAAACC TTATCCCTAA TCTCGAAATC
    TCTAACCATT CACCGATCTC TCGACGCTGC ACGATCCTTG GAAAACATCT
    CAATCCCGTT TCACAACTCC ATCGATTCTC AACGATACGC GTACTTCATC
    TACACACCTT TTCAGATCCC CGCTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 940004 [Map]; Strand: c
      • AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
        Distance: -196; Region: promoter
      • AT3G03750.1 - [+] show detail - SET domain protein 20
        Distance: 0; Region: exon1 (CDS)
      • AT3G03750.2 - [+] show detail - SET domain protein 20
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14386 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATCA 
    TCCGAATACG CGCTGACTTG GAGAAGCTTC CGACATTATT TCGGTCGACG
    ATCGATTTCT CCGATGTGCG AATTTGATTC TCCCATGGCT AAACCCTCGA
    GAACTCGCCG TTGTTGCTCA AACCTGCAAA ACCTTATCCC TAATCTCGAA
    ATCTCTAACC ATTCACCGAT CTCTCGACGC TGCACGATCC TTGGAAAACA
    TCTCAATCCC GTTTCACAAC TCCATCGATT CTCAACGATA CGCGTACTTC
    ATCTACACAC CTTTTCAGAT CCCCGCTTCA TCTCACTCGA C
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14386 - 5-prime edge
    CCATTGCAAA AGAGAGAGC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 939923 [Map]; Strand: c
      • AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
        Distance: -115; Region: promoter
      • AT3G03750.1 - [+] show detail - SET domain protein 20
        Distance: -29; Region: promoter
      • AT3G03750.2 - [+] show detail - SET domain protein 20
        Distance: -29; Region: promoter
    Flanking Genome Sequence: GT14386 - 5-prime edge
    ACTCTCGCAG TCGCTGCATA TTTTTTCTCA GCCAGCGATA TACAAACGAC 
    GTCGTTGCGT TTAATTCTAT TTATATCCTT AAATTCTATT TTAAATTCAC
    TTCAGTAAGA ATTTTTTAAA GAAAAATGGC GAGTTTTTTT GTGTTAATCA
    TAACTATAGA TTTACTACCG TCGCTTTGGT CTGTGTAATG AAATCTGTCA
    TTTTCACAGA GGAAAAAAAC TTACAAAGAC AAAATCCATT GCAAAAGAGC
    GAGCAACAAC GACGAAATTT CGAAATGCCA TCGCCACCGA CGACGACTTC
    TCTCTCGGTG ACACAGACCA TAAACGGATC ACACAGCTTC ACAATCAAAG
    GCTATTCTTT GGCTAAAGGA ATCGGGATCC GGAAAACACA TCGCCAGCGA
    TACTTTCACC GTCGGGGGTT ATCAATGGGC TATCTAATTT CT
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14386 - 5-prime edge
    CTCATGGCAT TTATAGATTT AAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 939926 [Map]; Strand: c
      • AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
        Distance: -118; Region: promoter
      • AT3G03750.1 - [+] show detail - SET domain protein 20
        Distance: -26; Region: promoter
      • AT3G03750.2 - [+] show detail - SET domain protein 20
        Distance: -26; Region: promoter
    Flanking Genome Sequence: GT14386 - 5-prime edge
    GTGACTCTCG CAGTCGCTGC ATATTTTTTC TCAGCCAGCG ATATACAAAC 
    GACGTCGTTG CGTTTAATTC TATTTATATC CTTAAATTCT ATTTTAATTT
    CACTTCAGTA AGAATTTTTT AAAGAAAAAT GGCGAGTTTT TTTGTGTTAA
    TCATAACTAT AGATTTACTA CCGTCGCTTT GGTCTGTGTA ATGAAATCTG
    TCATTTTCAC AGAGGAAAAA AACTTACAAA GACAAAATCC ATTGCAAAAG
    AGCGAGCAAC AACGACGAAA TTTCGAAATG CCATCGCCAC CGACGACTAC
    TTCTCTCTCG GAGACACAGA CCATAAACGG A

AT3G03740.1

Model type
Protein coding
Short Description
BTB-POZ and MATH domain 4
Computational Description
BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03750.1

Model type
Protein coding
Short Description
SET domain protein 20
Computational Description
SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 3083 Blast hits to 3057 proteins in 283 species: Archae - 0; Bacteria - 58; Metazoa - 1675; Fungi - 416; Plants - 716; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03750.2

Model type
Protein coding
Short Description
SET domain protein 20
Computational Description
SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (TAIR:AT2G23740.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR