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GT14397

CSHL Arabidopsis genetrap mutant lines

Original: GT14397

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14397

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3951470 [Map]; Strand: w
      • AT1G11720.1 - [+] show detail - starch synthase 3
        Distance: -83; Region: promoter
      • AT1G11720.2 - [+] show detail - starch synthase 3
        Distance: -83; Region: promoter
    Flanking Genome Sequence: GT14397 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    TGAAGCAGCC CCCTGACTCC ACTGCCTCAC CACACCACAC TTCTCAATCA
    CCGAAGTCTG AAACTCATCT CATTCATTAT TTTATTCCAA TTTATTCAGA
    GAATACATGT GTTGATTAAT ATTATTATAT TTATCATAAC AGTGGCTTTT
    ATTCATGAAA TTAAACCAAT GGTGCTCTGA TTTGTTGACA TCTAGCAAAA
    TAACAACACC AGATTTTACA ATCGCAGTCT CTCACACGCA GCCATTTGTT
    TGTATAATGT GGAAAATAAT ATTCGTCTGC TTCTCAGATT ATATTCCTTA
    CGGTGTCTAC CAACATTACA TAATCTGGAC GGCTAATCTT AAACAAATCA
    CGTGGAAAGT ATCGTAATAG CTCGTGACAA CCAAATTGTT TGGCCGGTGC
    ATTAGCGCCA CGTGTCAGAC AATCCCCGCT TTACAGGTCC ACGTCAAGCG
    ATCCTGTTTC CAACACTGAC CGTTGATTAC AAAGAATCGT CCAAGGGTCC
    ACGTGTACGA ACAGGATACG AATCTGATCC GTACCGTACC TCCAAAACAA
    ACCCTCTGGA CAGTTCAGTA GTTTCTTCCT AAAACTGAAA CAAGCTTTCA
    TTGGCTTTGT TGACTAAGGC CTTCCATTTT CTC
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14397 - 5-prime edge
    CTTGTCTAGG CAAAGCAACC CATATAAGAT ATATA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3951529 [Map]; Strand: w
      • AT1G11720.1 - [+] show detail - starch synthase 3
        Distance: -24; Region: promoter
      • AT1G11720.2 - [+] show detail - starch synthase 3
        Distance: -24; Region: promoter
    Flanking Genome Sequence: GT14397 - 5-prime edge
    CTTTCTCCCT GGCTTCACAA CAACATTCTC TCTCTCTTGT CTAAGCAAAG 
    CAACCCATAT AAGATATATA CCTGAAGTAC ACGACCACTT TCTTTCTCCA
    TCTCGTCTCT CTTTCTGTCT TCATCTCACT CGACCAGCTA TGGAAGTGTG
    TTGGCAGATA CAGAGACCAG CGAGTCTCAG ACCGGGTTTT CAGGAAAAGG
    GTCGGGTCAA GATCAATACT TTTTCTGTTG GGTTTTTTCC TCGCTCCATT
    TCTAGTGGAA ATCTCTTTTG TTTCATCTCA CTCGA

AT1G11720.1

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); FUNCTIONS IN: starch synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164; Bacteria - 3762; Metazoa - 19; Fungi - 103; Plants - 3720; Viruses - 1; Other Eukaryotes - 684 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11720.2

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1).
Link
InterPro Scan - TAIR