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GT14398

CSHL Arabidopsis genetrap mutant lines

Original: GT14398

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14398

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2576107 [Map]; Strand: c
      • AT3G08490.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant prote...
        Distance: -892; Region: promoter
    Flanking Genome Sequence: GT14398 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATTGGC 
    AAACCTTAAA TTTAGGTTTT TAGCCAAAAC ATCATTTTGT TATATCCGTT 
    TCTTTAAGTA TACGTTTTGA GTTTTTTCTT ACAATTCTTA AAATTTTCTG 
    TGTAAAGTAA TTAGAATACT TTTTGGATTT GTTCCCTTTT TTTTATTTAC 
    TTATTCATAT TTCATACCAA TCAAAGTTAA TAGAATGTAA ATTTTCTAAA 
    TTGATGTGAA ACGTATCGGG GAATATCCTT TATACTGAAC AGCTGCATTG 
    TTTACAATTT CTTAAGCAAT ATATTTACGA TCGAATAGTT TTTTTTTTGG 
    AGCCGAATTA ACCCCAATTT TAGGGAAAAA AAAAAAGAAA AAACTTAAAA 
    AGGTTTTTTA ATAACAAACC CGGTTTTACC CCATAATTAA ACCCCAAATT 
    TGTCCAAAAA ATTTTTTAAA AAAAAAGAAA AGCTTTTCCA ATGAAACCAC 
    CAAACCCCCC CCCGGCGGGG GGGCCCATAT TTAAAGACTT CCCCCACAAA 
    AAAAAATCCA AAGGACCCTC CCAATCCCCA TTCCAGGACC AAAGGAACCC 
    TGCCAGGGGA ATGGGTCCCC CCCCCAAAAA AAAAAACCAA GCCAAACAAA 
    ACCCCCCCCG TTCCCCCCGT TCCAAGAACA AAAATTTTTG GAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22211835 [Map]; Strand: w
      • AT3G60130.1 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron7 (CDS)
      • AT3G60130.3 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron6 (CDS)
      • AT3G60130.2 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT14398 - 5-prime edge 
    CTACTTTAGG GCGTGGTCCT GGTATGTTTG TTCTATTTCT TTATCTAGAG 
    TAGGTTGTTT GTTTGTGTTT GAATTTAGAT TTGATGTGTA CTCTTTCCAA 
    ATGATCTCAT AGTATTTAAT CATACTAACA AAATCCTTTT GTTCGTAAAA 
    TAAAAATGTT TACATTGTCC AATTGAGTCC CTTACTCTGT TTTTGCTTTA 
    ACTCTGTTTT ACTCTGTTTC CGGTCTGCTC TGTTTTCGCT CTGTTTCAAC 
    TCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22211857 [Map]; Strand: w
      • AT3G60130.1 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron7 (CDS)
      • AT3G60130.3 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron6 (CDS)
      • AT3G60130.2 - [+] show detail - beta glucosidase 16
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT14398 - 5-prime edge 
    TATGTTTGTT CTATTTCTTT ATCTAGAGTA AAATTGTTTG TTTGTGTTTG 
    AATTTAGATT TGATGTGTAC TCTTTCCAAA TGATCTCATA GTATTTAATC 
    ATACTAACAA AATCCTTTTG TTCGTAAAAT AAAAATGTTT ACATTGTCCA 
    ATTGAGTCCC TTACTCTGTT TTTGCTTTAA CTCTGTTTTA CTCTGTTTCC 
    GGTCTGCTCT GTTTTCGCTC TGTTTCTGGT CACTCGACCA ANNACNCTGC 
    TTACCATTTG CTATGTTTTA CTTTATTTCC GCTCTACTCT AGTTCTACTA 
    TGCTCTGTTT ATGCTCTAGT ATGTTTCTTT ACCGTAACAG TACTGGGATT 
    GGCTTGATCA ATCTCGTATC GAATCTTAAT TTTGGTTACC AAATCCTCAT 
    AAAATTTACA CTGTTGTATA TCAGTGACAA CATTTCGTTC CTAATATGTA 
    TGATGTCCAC AGGCAACTCA GAAAGGTGAA ATTGGTATTG CCTTAAACAC 
    AGCATGGCAC TACCCTTATT CAGAT

AT3G08490.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60130.1

Model type
Protein coding
Short Description
beta glucosidase 16
Computational Description
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 11475 Blast hits to 11098 proteins in 1475 species: Archae - 144; Bacteria - 7936; Metazoa - 718; Fungi - 200; Plants - 1457; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60130.2

Model type
Protein coding
Short Description
beta glucosidase 16
Computational Description
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60130.3

Model type
Protein coding
Short Description
beta glucosidase 16
Computational Description
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 11180 Blast hits to 10839 proteins in 1465 species: Archae - 144; Bacteria - 7776; Metazoa - 711; Fungi - 196; Plants - 1395; Viruses - 0; Other Eukaryotes - 958 (source: NCBI BLink).
Link
InterPro Scan - TAIR