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GT14405

CSHL Arabidopsis genetrap mutant lines

Original: GT14405

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14405

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 881182 [Map]; Strand: w
      • AT3G03630.1 - [+] show detail - cysteine synthase 26
        Distance: -736; Region: promoter
      • AT3G03640.1 - [+] show detail - beta glucosidase 25
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14405 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCT 
    GGAAAGCAGA AGTTGTAGCA CCGAACAAGA AACCATCAGG AAAGCTTCCA 
    CGACCAAACG TGGAACTCGC CGGACACACA GCTCCACCGT AGACGGTGAT 
    CGGAGAAACT ATCACGACGA GAAATAAACC CAAAAAGAGA ATCGCTTTGA 
    GTGCCATTTT TCAAGTAAGT TTTTTTTATG CTTAACGTGG TTGTCGTGTT 
    CCATTATTTA TAAGAGTCGA GATCACAAAG AAGAAGAATT TAAAAGATAG 
    TTGTTTTTGA GATCCAATAC TTCGTCTCGA AGATTAAAGC AAGGTGAGAG 
    CGACGTGTGT GTTAAAATAA ACTATCTTTG ATATTGTACA TTTAATTTTC 
    GATAGCTTAG CCTTGTCTTG TCGACGACGA TGGTAGTAGT AGAAGAAACA 
    ACGTTAAGGT TCCTTCTTAC CACGGTAAAA AATAAATAAC AACAACCAAT 
    AATTGTAATT CTATAACTTA ATTTTTGAAA AACAGTTTTT AATTTGAAAC 
    AACATAATTT TACCTTTTAT ACGGACTAAT ATATACCTAC GACAAAAAAA 
    GGACTAAATT TATAGCTAAT TTTTTTGTTT TTTTTTCCAA TTTATATAAG 
    TAAGTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 881283 [Map]; Strand: w
      • AT3G03630.1 - [+] show detail - cysteine synthase 26
        Distance: -837; Region: promoter
      • AT3G03640.1 - [+] show detail - beta glucosidase 25
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14405 - 5-prime edge 
    TCCAAACATT GTTGAATCGC CGTTGACTGG ATTCTTTTTG TCCGGCGAGT 
    TTTAATATTT CGTTGCCGGA TTTACTCTAA TATCAGCTCT AGCAGCTTTG 
    TAAGTACGAT TAAGAAAGTC TTTAATCTCA AATCTAGTTT AAAGAAATCA 
    AATTTGGTAT CTTTAGTCAA ACCAAATAGC TTGAAAGGGA AAAGTTTAAA 
    GCTTTTTCCA ATTCAAGGCA GTCATTGGTC ATTTTCAAGT CTCTAGTTTT 
    AATGCCTAAG GGTAGTTTTC TTTTTCACAT TCACTTTTGA ATTCTGTTGA 
    TGATGCTTCA AGTTTCCTGA TTGACTTATT GATAGTCCTC TTCTACTGCC 
    AAAACGTTTC TAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 881237 [Map]; Strand: w
      • AT3G03630.1 - [+] show detail - cysteine synthase 26
        Distance: -791; Region: promoter
      • AT3G03640.1 - [+] show detail - beta glucosidase 25
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14405 - 5-prime edge 
    CCTACTTTAT CCCTGTTTCA GGTATATCGA ATTTGGGATT TATAAGTCCA 
    AACATTGTTG AATCGCCGTT GACTGGATTC TTTTTGTCCG GCGAGTTTTA 
    ATATTTCGTT GCCGGATTTA CTCTAATATC AGCTCTAGCA GCTTTGTGAG 
    TACGATTAAG AAAGTCTTTA ATCTCAAATC TAGTTTAAAG AAATCAAATT 
    TGGTATCTTT AGTCAAACCA AATAGCTTGA AAGGGAAAAG TTTAAAGCTT 
    TTTCCAATTC AAGGCAGTCA TTGGTCATTT TCAAGTCTCT AGATTATATG 
    CCTAAGGGTA GTTTCTTTTT CACATTCACT TTTGAATTCT GTTGAGGATG 
    CTTCAAGTTC CATGATTGAC TTACTGATAG TCCTCTTCTA CTGCCAA

AT3G03630.1

Model type
Protein coding
Short Description
cysteine synthase 26
Curator Summary
Encodes a protein that possesses S-sulfocysteine synthase activity and lacks O-acetylserien(thiol)lyase activity.
Computational Description
cysteine synthase 26 (CS26); FUNCTIONS IN: cysteine synthase activity; INVOLVED IN: regulation of hydrogen peroxide metabolic process, cysteine biosynthetic process, regulation of superoxide metabolic process, photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase isoform C (TAIR:AT3G59760.3); Has 20790 Blast hits to 20777 proteins in 2676 species: Archae - 415; Bacteria - 14597; Metazoa - 363; Fungi - 563; Plants - 551; Viruses - 2; Other Eukaryotes - 4299 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03640.1

Model type
Protein coding
Short Description
beta glucosidase 25
Curator Summary
Encodes beta-glucosidase (GLUC).
Computational Description
beta glucosidase 25 (BGLU25); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 19 (TAIR:AT3G21370.1); Has 10939 Blast hits to 10660 proteins in 1455 species: Archae - 140; Bacteria - 7563; Metazoa - 694; Fungi - 200; Plants - 1435; Viruses - 0; Other Eukaryotes - 907 (source: NCBI BLink).
Link
InterPro Scan - TAIR